HistAI / SPIDER
SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face 🤗.
☆18Updated 3 weeks ago
Alternatives and similar repositories for SPIDER:
Users that are interested in SPIDER are comparing it to the libraries listed below
- Data and code to accompany our Nature publication☆45Updated 2 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆58Updated last month
- Python 3 library for the augmentation & normalization of H&E images☆53Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆68Updated this week
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆97Updated 2 months ago
- GrandQC tool for tissue detection and quality control in pathology☆33Updated 3 weeks ago
- A tool for rapidly labeling objects using deep learning feature embedding☆31Updated 7 months ago
- ☆30Updated last week
- First commit☆61Updated 2 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆31Updated 2 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated last month
- ☆47Updated 2 years ago
- Pipeline for computational pathology☆34Updated last year
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆31Updated 2 years ago
- ☆60Updated last month
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆51Updated last year
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- A vision language model for gigapixel whole slide images in histopathology☆38Updated 6 months ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆75Updated 4 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆23Updated 4 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆68Updated 8 months ago
- ☆43Updated last year
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆31Updated 8 months ago
- We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel di…☆16Updated 2 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆36Updated last week
- Inference code for HoVer-NeXt☆31Updated last month
- Codebase for "A Foundation Model for Cell Segmentation"☆74Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆68Updated last year
- Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding☆28Updated 6 months ago