Alternatives and similar repositories for SPIDER

Users that are interested in SPIDER are comparing it to the libraries listed below

• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆47Updated 3 months ago
• jamesdolezal / synthetic-histology
  Synthetic histology using GANs, for deep learning model explainability and trainee education.
  ☆15Updated last year
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆100Updated 4 months ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆56Updated 2 years ago
• HistAI / hibou
  Hibou: Foundational Models for Pathology
  ☆72Updated 7 months ago
• Path-AI / hif2gene
  Data and code to accompany our Nature publication
  ☆46Updated 3 years ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆79Updated this week
• marrlab / HistoGPT
  A vision language model for gigapixel whole slide images in histopathology
  ☆64Updated 8 months ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆67Updated 4 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆70Updated 10 months ago
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆68Updated 4 years ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆31Updated 3 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆39Updated last week
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 4 months ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆62Updated 3 months ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆32Updated 9 months ago
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆83Updated 3 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated 2 months ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆94Updated 2 weeks ago
• huangzhii / IMPRESS
  ☆21Updated 2 years ago
• impromptuRong / hd_wsi
  ☆33Updated 2 months ago
• fmhoward / HistoXGAN
  Accurate encoding of histologic images into StyleGAN space for discovery and explainability
  ☆11Updated 6 months ago
• masih4 / NuInsSeg
  NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images
  ☆33Updated 10 months ago
• taliq / TEA-graph
  First commit
  ☆62Updated 2 years ago
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆77Updated last week
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆157Updated 5 months ago
• digitalpathologybern / hover_next_inference
  Inference code for HoVer-NeXt
  ☆35Updated last month
• KatherLab / deepmed
  ☆48Updated 3 years ago
• choosehappy / CohortFinder
  Intelligent data partitioning using quality control metrics
  ☆18Updated 6 months ago