Alternatives and similar repositories for bix

Users that are interested in bix are comparing it to the libraries listed below

• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆78Updated 5 years ago
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆72Updated 2 months ago
• bcgsc / mavis
  Merging, Annotation, Validation, and Illustration of Structural variants
  ☆75Updated 2 years ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago
• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆95Updated 2 weeks ago
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆86Updated last week
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• ding-lab / CharGer
  Characterization of Germline variants
  ☆98Updated 3 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 5 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 9 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆77Updated 7 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• Kingsford-Group / kbf
  ☆15Updated 9 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• griffithlab / civic-client
  Web client for CIViC: Clinical Interpretations of Variants in Cancer
  ☆50Updated last year
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆30Updated 3 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆86Updated 6 years ago
• lh3 / bwa-docker
  Minimal docker image for bwa. Not developed any more.
  ☆11Updated 10 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• brentp / goleft
  goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
  ☆224Updated last month
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆47Updated 6 years ago
• Illumina / agg
  gvcf aggregation tool
  ☆12Updated 7 years ago
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆62Updated 6 years ago
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆70Updated 3 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• lh3 / CHM-eval
  ☆55Updated 5 years ago