Alternatives and similar repositories for bix

Users that are interested in bix are comparing it to the libraries listed below

• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆95Updated 2 months ago
• bcgsc / mavis
  Merging, Annotation, Validation, and Illustration of Structural variants
  ☆75Updated 2 years ago
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• brentp / bigly
  a pileup library that embraces the huge
  ☆43Updated 5 years ago
• shenwei356 / go4bio
  Golang for Bioinformatics
  ☆31Updated 9 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 3 years ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 5 years ago
• quinlan-lab / STRling
  Detect novel (and reference) STR expansions from short-read data
  ☆70Updated last month
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• brentp / vcfgo
  a golang library to read, write and manipulate files in the variant call format.
  ☆72Updated 4 months ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated last year
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 7 months ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆62Updated last year
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆59Updated last year
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 6 years ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆48Updated 7 years ago
• bioinformed / vgraph
  vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…
  ☆43Updated 4 years ago
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆78Updated 5 years ago
• jteutenberg / downpore
  Suite of tools for use in genome assembly and consensus. Work in progress.
  ☆31Updated 4 years ago
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆29Updated 2 years ago
• HipSTR-Tool / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆31Updated 4 years ago
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆19Updated last year
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆71Updated 5 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated last month
• daviddaiweizhang / fraposa
  ☆17Updated 2 years ago
• vertgenlab / gonomics
  A collection of genomics software tools written in Go (golang).
  ☆86Updated this week
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆59Updated 8 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 10 months ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 4 months ago