broadinstitute / barclay
Command line argument parser and online documentation generation utilities for java command line programs.
☆9Updated last week
Related projects ⓘ
Alternatives and complementary repositories for barclay
- Java SDK for the Common Workflow Language standards☆12Updated 2 weeks ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆41Updated last week
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics☆29Updated 2 weeks ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆39Updated last week
- ☆14Updated 2 years ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Updated 6 years ago
- CPIC Data definitions and code to use that data☆27Updated this week
- Java Bindings (JNI) for bwa☆19Updated 7 years ago
- Free mtDNA Haplogroup Classification Service☆22Updated 3 months ago
- Backend server for Genome Nexus☆40Updated last month
- Annotation of VCF variants with functional impact and from databases (executable+library)☆58Updated 2 weeks ago
- Nextflow Tower CLI tool☆43Updated last week
- Home of the Genomic Feature and Variation Ontology (GFVO)☆16Updated 3 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- WDL tools for parsing, type-checking, and more☆25Updated 4 months ago
- An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.☆12Updated this week
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆22Updated last month
- BigWIG, BigBED and TDF for the JVM☆13Updated 3 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Rawls service for DSDE☆26Updated this week
- A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specific…☆21Updated last month
- Synteny Mapping and Analysis Program☆26Updated last month
- Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalabilit…☆63Updated 7 months ago
- Next generation sequencing (NGS/HTS) tools.☆18Updated 9 months ago
- Project Manager for NGS data analysis☆27Updated 2 years ago
- Load genomic BAM files using Apache Spark☆20Updated 6 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago