Alternatives and similar repositories for cpic-data

Users that are interested in cpic-data are comparing it to the libraries listed below

• SBIMB / StellarPGx
  Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.
  ☆33Updated 2 months ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆45Updated last year
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆64Updated this week
• griffithlab / DeepSVR
  ☆50Updated 6 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆71Updated 4 months ago
• CCBR / Pipeliner
  An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
  ☆4Updated 2 years ago
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆28Updated 3 years ago
• TRON-Bioinformatics / tronflow-hla-hd
  A Nextflow workflow for HLA typing using HLA-HD
  ☆11Updated last year
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆82Updated this week
• Helix-Research-Lab / PGxPOP
  PGxPOP
  ☆17Updated 2 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆49Updated this week
• GiovannaNicora / MLVar
  ☆19Updated 2 years ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆126Updated 2 weeks ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated last month
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆84Updated 2 months ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆18Updated last year
• pachterlab / fastQpick
  ☆27Updated 6 months ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆75Updated 4 months ago
• ZuchnerLab / Maverick
  A Mendelian approach to variant effect prediction built in keras
  ☆19Updated 10 months ago
• linnil1 / HLA_collections
  A script to run HLA typing tools from next generation sequencing data
  ☆12Updated 2 years ago
• gagneurlab / absplice
  ☆39Updated last month
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆29Updated 4 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• gatk-workflows / gatk4-jupyter-notebook-tutorials
  This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
  ☆26Updated 5 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆34Updated last week