cpicpgx / cpic-data
CPIC Data definitions and code to use that data
☆27Updated 2 months ago
Alternatives and similar repositories for cpic-data:
Users that are interested in cpic-data are comparing it to the libraries listed below
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 10 months ago
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆31Updated 3 weeks ago
- The Pharmacogenomic Clinical Annotation Tool☆126Updated this week
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆52Updated 6 months ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆58Updated 2 weeks ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- Characterization of Germline variants☆98Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆75Updated last month
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 4 years ago
- A Python package for pharmacogenomics (PGx) research☆66Updated 5 months ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆88Updated this week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- using all the bits for echt rapid variant annotation and filtering☆148Updated 2 months ago
- My bioinfo toolbox☆48Updated 3 months ago
- A novel pipeline framework to accelerate bioinformatics analysis☆29Updated last year
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆81Updated last week
- Workflows for converting between sequence data formats☆37Updated 3 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- ☆43Updated 6 years ago
- This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …☆41Updated 9 months ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆64Updated last year
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- A modular annotation tool for genomic variants☆117Updated last week
- Sphinx documentation source for a computational genomics tutorial.☆33Updated 4 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- integrated RNA-seq Analysis Pipeline☆85Updated 5 years ago
- ☆55Updated 3 weeks ago
- ☆23Updated 6 years ago