CPIC Data definitions and code to use that data
☆31Mar 13, 2026Updated last week
Alternatives and similar repositories for cpic-data
Users that are interested in cpic-data are comparing it to the libraries listed below
Sorting:
- A Python package for pharmacogenomics (PGx) research☆84Jan 4, 2026Updated 2 months ago
- The Pharmacogenomic Clinical Annotation Tool☆161Feb 25, 2026Updated 3 weeks ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆16Dec 28, 2022Updated 3 years ago
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆36Mar 9, 2026Updated last week
- Pipeline for generating RNAseq-based cancer patient reports☆11Mar 10, 2026Updated last week
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆21Nov 13, 2025Updated 4 months ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆13Oct 7, 2025Updated 5 months ago
- A tool to genotype CYP2D6 with WGS data☆55Oct 14, 2023Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- An Fast variant calling tool to detection germline and somatic variants☆11Feb 21, 2026Updated last month
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 4 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆77Feb 28, 2023Updated 3 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆18Oct 10, 2022Updated 3 years ago
- ☆20Nov 17, 2025Updated 4 months ago
- A Mendelian approach to variant effect prediction built in keras☆20Nov 3, 2025Updated 4 months ago
- RNA-seq analysis scripts☆16Jan 8, 2026Updated 2 months ago
- Tutorial on survival modeling with omics data☆11Mar 12, 2025Updated last year
- ☆13Jul 17, 2024Updated last year
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆15Oct 17, 2021Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- 💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome☆23Aug 20, 2025Updated 7 months ago
- Search public databases for given genotypic information☆11Mar 21, 2018Updated 8 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 3 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)☆33Nov 14, 2025Updated 4 months ago
- Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide☆26Mar 2, 2026Updated 2 weeks ago