Alternatives and similar repositories for epigraphdb-pqtl

Users that are interested in epigraphdb-pqtl are comparing it to the libraries listed below

• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆24Updated 3 years ago
• satoshi-yoshiji / TwoStepMR_Obesity_COVID
  Codes for our NPNT paper at Nature Metabolism
  ☆16Updated last year
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆40Updated last year
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆38Updated last year
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 6 months ago
• MRCIEU / epigraphdb-r
  R package for epigraphdb
  ☆28Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆28Updated last week
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆32Updated last month
• MRCIEU / MRInstruments
  Data objects for various sets of instruments
  ☆45Updated 5 years ago
• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆26Updated last year
• ACDBio / AutoMR
  An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of su…
  ☆33Updated 2 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆34Updated last year
• WSpiller / MVMR
  MVMR R Package
  ☆51Updated 2 weeks ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• catherinestorm / mr_druggable_genome_pd
  ☆22Updated 3 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆41Updated 5 months ago
• xiechengyong123 / friendly2MR
  ☆44Updated 9 months ago
• zdq0808 / Blasso
  Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers
  ☆20Updated 2 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆55Updated 4 years ago
• marcoralab / MRcovid
  ☆11Updated 3 years ago
• qingyuanzhao / mr.raps
  R package for two-sample Mendelian randomization using the robust adjusted profile score
  ☆38Updated 5 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated 11 months ago
• fernandam93 / epiclocks_cancer
  This code relates to the project titled "Assessing the causal role of epigenetic clocks in the development of multiple cancers: a Mendeli…
  ☆14Updated 3 years ago
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆85Updated 2 months ago
• gqi / MRMix
  R package for performing Mendelian Randomization using mixture models
  ☆24Updated 5 years ago
• AndrewsLabUCSF / MR-tutorial
  Tutorial for running Mendelian Randomization analysis using R
  ☆34Updated last year
• YangLabHKUST / MR-APSS
  Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics
  ☆42Updated 4 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year