Alternatives and similar repositories for epigraphdb-pqtl

Users that are interested in epigraphdb-pqtl are comparing it to the libraries listed below

• ACDBio / AutoMR
  An R script to perform two sample Mendelian randomization screening (with TwoSampleMR) for a custom summary statistic against a set of su…
  ☆33Updated 2 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆29Updated 8 months ago
• alhenry / cvd1-hf
  Analysis code for Olink CVD1 - HF analysis
  ☆12Updated 10 months ago
• jwr-git / pwcoco
  Pair-wise conditional analysis and colocalisation
  ☆41Updated last year
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆34Updated 4 months ago
• MRCIEU / MRInstruments
  Data objects for various sets of instruments
  ☆44Updated 5 years ago
• jingshuw / GRAPPLE
  An R package for Mendelian Randomization
  ☆38Updated last year
• studentyaoshi / MR
  ☆22Updated 2 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆53Updated 4 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆54Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆27Updated this week
• jean997 / cause
  R package for CAUSE
  ☆55Updated last year
• xiechengyong123 / friendly2MR
  ☆44Updated 7 months ago
• gagelo01 / GagnonMR
  ☆52Updated last year
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• satoshi-yoshiji / TwoStepMR_Obesity_COVID
  Codes for our NPNT paper at Nature Metabolism
  ☆16Updated last year
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆32Updated last year
• fernandam93 / epiclocks_cancer
  This code relates to the project titled "Assessing the causal role of epigenetic clocks in the development of multiple cancers: a Mendeli…
  ☆14Updated 3 years ago
• mglev1n / ldscr
  LD Score Regression in R
  ☆45Updated last year
• segrelabgenomics / TwoSampleMR_pipeline
  Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
  ☆26Updated last year
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆34Updated last week
• catherinestorm / mr_druggable_genome_pd
  ☆22Updated 3 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• explodecomputer / plinkbinr
  R package that contains plink binaries for windows, mac and linux
  ☆10Updated 5 years ago
• AndrewsLabUCSF / MR-tutorial
  Tutorial for running Mendelian Randomization analysis using R
  ☆33Updated last year
• mglev1n / mrbma
  Mendelian Randomization Bayesian Model Averaging
  ☆22Updated 2 years ago
• MRCIEU / gwasglue2
  Connecting GWAS summary data to analytical tools
  ☆21Updated last year
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆90Updated last year
• Rick-Chen-PKU / Depression_GI
  This code relates to the project titled "Depression and risk of gastrointestinal disorders: a comprehensive two-sample Mendelian randomiz…
  ☆18Updated 2 years ago