blahah / slidewinder
This repo has moved to the slidewinder organisation
☆8Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for slidewinder
- Reproducible Phylogenomics☆22Updated 8 years ago
- blast, shmlast☆21Updated 4 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 8 years ago
- Pipeline for poreathon☆14Updated 9 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Updated 9 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 6 years ago
- ☆18Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 4 months ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- reference free variant assembly☆32Updated last year
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 2 years ago
- Very very long reads, indeed☆13Updated 7 years ago
- ☆19Updated 7 years ago
- Demonstrating the PRoot program☆12Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- Naive PCA for genotype data☆10Updated 8 years ago
- Genetic coordinates so simple, it feels like MAGIC!☆10Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 7 years ago
- ☆14Updated 8 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- ☆22Updated 2 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 6 years ago