Code for recreating the figures in the brainrender paper (Claudi et al. 2020)
☆12Dec 11, 2020Updated 5 years ago
Alternatives and similar repositories for brainrender_paper
Users that are interested in brainrender_paper are comparing it to the libraries listed below
Sorting:
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- ☆10Mar 15, 2023Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Feb 13, 2026Updated 2 weeks ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- A Python package to download neuronal morphologies☆18Feb 3, 2026Updated 3 weeks ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- ☆11Oct 21, 2025Updated 4 months ago
- Build unbiased anatomical templates from individual images☆12Updated this week
- Anatomical space conventions made easy.☆12Feb 20, 2026Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Re-usable GitHub Action scripts☆14Feb 9, 2026Updated 3 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Feb 13, 2026Updated 2 weeks ago
- brainglobe.info website☆13Updated this week
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Dec 16, 2025Updated 2 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- A package to manage electrophysiology analysis.☆22Feb 23, 2026Updated last week
- Fancier logging with python.☆16Feb 2, 2026Updated last month
- Mix-and-match computer vision tools for your animal behaviour analysis☆27Feb 3, 2026Updated 3 weeks ago
- Tool for the creation, validation and transfer of neuroscience project folders.☆33Updated this week
- Utility to create a basic Python project structure with tests, CI etc.☆36Updated this week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆25Feb 13, 2026Updated 2 weeks ago
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated 10 months ago
- Segmentation of anatomical structures in a common coordinate space☆35Feb 17, 2026Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Nov 24, 2023Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆50Feb 20, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆29Feb 16, 2026Updated 2 weeks ago
- An R toolbox for analysing movement across space and time☆10Jan 16, 2026Updated last month
- DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.☆13Updated this week
- Store for video frames and metadata. Seekable & scaleable☆11Feb 20, 2026Updated last week
- Behavior Classifier Component from the Jax Animal Behavior System☆20Updated this week
- pythonic video reader☆13Oct 13, 2024Updated last year
- Napari plugin for working with video files.☆13Aug 20, 2025Updated 6 months ago
- Automated 3D brain registration with support for multiple species and atlases.☆144Feb 13, 2026Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆22Feb 4, 2026Updated 3 weeks ago
- GPU-based 3D non-rigid volumetric registration☆43Aug 26, 2025Updated 6 months ago
- Standalone utilities for SLEAP pose tracking data.☆21Updated this week