Alternatives and similar repositories for ammolite

Users that are interested in ammolite are comparing it to the libraries listed below

• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• Faezov / PDBrenum
  ☆30Updated 8 months ago
• biotite-dev / fastpdb
  A high performance drop-in replacement for Biotite's PDBFile.
  ☆41Updated 8 months ago
• tristanic / pae_to_domains
  Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix
  ☆35Updated 3 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆66Updated last month
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆62Updated 5 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆57Updated last year
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 3 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆63Updated 10 months ago
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆17Updated last year
• PDB-REDO / AlphaBridge
  ☆50Updated last month
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆29Updated 11 months ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆30Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆54Updated 5 months ago
• NeurosnapInc / neurosnap
  Collection of useful bioinformatic functions and tools for various computational biology pipelines
  ☆39Updated this week
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆76Updated 2 months ago
• cmbi / dssp
  The DSSP building software
  ☆50Updated 2 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• ncbi / SSDraw
  ☆87Updated 2 months ago
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• Qrouger / PPIFold
  ☆22Updated 2 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆36Updated 10 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 10 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆39Updated this week
• proteinphysiologylab / frustratometeR
  ☆39Updated 7 months ago
• JBEI / foldy
  Foldy: a web-based platform for interactive protein structure analysis
  ☆28Updated 3 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆63Updated 3 months ago
• wells-wood-research / timed-design
  Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis
  ☆63Updated 3 months ago