Visualize structure data from Biotite with PyMOL
☆26Mar 16, 2025Updated last year
Alternatives and similar repositories for ammolite
Users that are interested in ammolite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high performance drop-in replacement for Biotite's PDBFile.☆42May 27, 2025Updated 11 months ago
- A bridge between Biotite and OpenMM☆15Mar 16, 2025Updated last year
- Generated color schemes for sequence alignment visualizations☆18Jul 20, 2022Updated 3 years ago
- Adding hydrogens to molecular models☆62Nov 24, 2025Updated 5 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tutorial files☆12Aug 7, 2024Updated last year
- A program fror inter-protein contact prediction from structures of interacting proteins☆21Jun 1, 2024Updated last year
- A comprehensive library for computational molecular biology☆950May 10, 2026Updated last week
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆36Jul 28, 2022Updated 3 years ago
- Protein preparation for MD, made faster and easier !☆15Dec 18, 2023Updated 2 years ago
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- Flexible Artificial Intelligence Docking☆18Aug 27, 2025Updated 8 months ago
- Metrics for our protein design competitions.☆35Nov 1, 2024Updated last year
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient storage of same-type, uneven-size arrays☆12Aug 5, 2018Updated 7 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆64May 21, 2025Updated last year
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 5 months ago
- Hacking structural biology with Python and pandas☆21Nov 7, 2015Updated 10 years ago
- ZDOCK predictions and PDB structures in C++ and Python☆15Jan 1, 2024Updated 2 years ago
- ☆13Dec 5, 2024Updated last year
- Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3, Protenix & RF3 with MMseqs2 MSAs and custom templates.☆106Apr 28, 2026Updated 3 weeks ago
- ☆16Mar 28, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Weighted Ensemble Data Analysis and Plotting☆27Dec 11, 2025Updated 5 months ago
- ☆11Sep 27, 2022Updated 3 years ago
- Interactive plotting of data annotated with molecule structures.☆12Nov 30, 2023Updated 2 years ago
- A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib☆19May 20, 2024Updated 2 years ago
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- ☆58May 12, 2026Updated last week
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆54Apr 20, 2025Updated last year
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- MHC-II presentation predictor☆13Aug 11, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Apr 16, 2026Updated last month
- ☆95Feb 14, 2024Updated 2 years ago
- code and source data for de novo design of Kemp elimination paper☆26Sep 18, 2025Updated 8 months ago