Alternatives and similar repositories for bioperl-run

Users that are interested in bioperl-run are comparing it to the libraries listed below

• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 6 years ago
• bioperl / p5-bpwrapper
  BioPerl scripts and utilities
  ☆11Updated 3 months ago
• Ensembl / ensembl-compara
  The Ensembl Compara Perl API and SQL schema
  ☆55Updated last week
• caballero / SeqComplex
  Algorithms to compute DNA complexity
  ☆35Updated 3 years ago
• GMOD / GBrowse
  the Generic Genome Browser
  ☆49Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆76Updated 3 years ago
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆83Updated 3 months ago
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆102Updated 6 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 2 months ago
• audy / stitch
  Overlap assembler of paired-end DNA sequences generated by Illumina
  ☆22Updated 9 years ago
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆95Updated 7 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• Victorian-Bioinformatics-Consortium / nesoni
  High throughput sequencing analysis tools
  ☆30Updated 8 months ago
• neufeld / pandaseq
  PAired-eND Assembler for DNA sequences
  ☆137Updated 5 years ago
• vsbuffalo / bioawk-tutorial
  ☆44Updated 12 years ago
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆25Updated 11 months ago
• seqan / flexbar
  flexible barcode and adapter removal
  ☆80Updated 2 years ago
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆62Updated 2 years ago
• arq5x / bedtools
  A powerful toolset for genome arithmetic.
  ☆142Updated 4 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆56Updated 5 years ago
• najoshi / sabre
  ☆63Updated 5 years ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated 2 years ago
• alyssafrazee / ballgown
  Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
  ☆148Updated 4 years ago
• biocoder / Perl-for-Bioinformatics
  An attempt to help anyone interested in using Perl for Bioinformatics
  ☆35Updated 6 years ago
• nmclark2 / SCION
  Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)
  ☆12Updated last year
• likelet / LncPipe
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆84Updated 3 years ago
• pcingola / SnpSift
  ☆38Updated last month
• lh3 / tabtk
  Toolkit for processing TAB-delimited format
  ☆62Updated last year
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 12 years ago
• maasha / biopieces
  Biopieces is a bioinformatic framework of tools easily used and easily created.
  ☆144Updated 7 years ago