Alternatives and similar repositories for bioperl-run:

Users that are interested in bioperl-run are comparing it to the libraries listed below

• bioperl / p5-bpwrapper
  BioPerl scripts and utilities
  ☆11Updated 4 months ago
• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 5 years ago
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆24Updated 2 months ago
• Ensembl / ensembl-compara
  The Ensembl Compara Perl API and SQL schema
  ☆52Updated this week
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 4 months ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆82Updated last month
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 6 months ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆74Updated 4 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 7 years ago
• GMOD / GBrowse
  the Generic Genome Browser
  ☆49Updated last year
• biocoder / Perl-for-Bioinformatics
  An attempt to help anyone interested in using Perl for Bioinformatics
  ☆34Updated 5 years ago
• yechengxi / DBG2OLC
  A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…
  ☆65Updated 4 years ago
• seqan / lambda
  LAMBDA – the Local Aligner for Massive Biological DatA
  ☆78Updated 7 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated last year
• Ensembl / ensembl-analysis
  Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
  ☆18Updated this week
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• ncbi / magicblast
  ☆36Updated this week
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆60Updated 3 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆92Updated 10 months ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆88Updated 3 years ago
• wurmlab / genevalidatorapp
  A web wrapper for GeneValidator
  ☆11Updated 4 years ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆28Updated this week
• Ensembl / ensembl-tools
  Ensembl tools
  ☆34Updated 5 months ago
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆122Updated 5 months ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆66Updated last year
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆84Updated 6 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆54Updated 4 years ago
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆126Updated 3 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆73Updated 6 years ago