Alternatives and similar repositories for bioperl-run

Users that are interested in bioperl-run are comparing it to the libraries listed below

• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 5 years ago
• bioperl / p5-bpwrapper
  BioPerl scripts and utilities
  ☆11Updated 7 months ago
• GMOD / GBrowse
  the Generic Genome Browser
  ☆49Updated 2 years ago
• Ensembl / Bio-DB-HTS
  Git repo for Bio::HTS module on CPAN, providing Perl links into HTSlib
  ☆24Updated 5 months ago
• Ensembl / ensembl-compara
  The Ensembl Compara Perl API and SQL schema
  ☆52Updated this week
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 3 weeks ago
• biocoder / Perl-for-Bioinformatics
  An attempt to help anyone interested in using Perl for Bioinformatics
  ☆34Updated 5 years ago
• genoo / GenOO
  A Modern Perl Framework for High Throughput Sequencing analysis
  ☆17Updated 5 years ago
• Geo-omics / scripts
  Metagenomic pipeline and other general scripts used in the lab.
  ☆35Updated 5 months ago
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated 9 months ago
• inodb / snakemake-workflows
  An experimental repo for common snakemake rules and workflows
  ☆46Updated 10 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆55Updated 5 years ago
• datasnakes / OrthoEvolution
  An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
  ☆28Updated 2 weeks ago
• Ensembl / ensembl
  The Ensembl Core Perl API and SQL schema
  ☆80Updated last month
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated last week
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 7 months ago
• Ensembl / ensembl-variation
  The Ensembl Variation Perl API and SQL schema
  ☆28Updated this week
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆12Updated 4 years ago
• rvosa / bio-phylo
  Bio::Phylo - Phyloinformatic analysis using Perl
  ☆16Updated 6 years ago
• clindet / rctl
  A set of command line tools based on R and JavaScript.
  ☆18Updated 5 years ago
• chapmanb / bcbio.variation
  Toolkit to analyze genomic variation data, built on the GATK with Clojure
  ☆66Updated 9 years ago
• cjfields / bioperl6
  reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
  ☆48Updated 6 years ago
• wurmlab / genevalidatorapp
  A web wrapper for GeneValidator
  ☆11Updated 4 years ago
• lindenb / samtools-utilities
  Utilities for Samtools ( http://samtools.sourceforge.net/ )
  ☆18Updated 13 years ago
• epi2me-labs / wf-amplicon
  ☆37Updated 2 months ago
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆61Updated 3 years ago
• phasegenomics / FALCON-Phase
  FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
  ☆75Updated 4 years ago
• icebert / pblat
  parallelized blat with multi-threads support
  ☆53Updated 5 months ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 4 months ago