Alternatives and similar repositories for patch-seq-rrr

Users that are interested in patch-seq-rrr are comparing it to the libraries listed below

• calebweinreb / SNUB
  ☆28Updated last year
• murthylab / GLMHMM
  ☆24Updated 5 years ago
• jewellsean / FastLZeroSpikeInference
  Fast Exact Spike Inference Via L0 Optimization
  ☆15Updated 5 years ago
• MouseLand / stringer-pachitariu-et-al-2018a
  Recordings of 10k neurons during spontaneous behaviors
  ☆53Updated last year
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆15Updated 2 years ago
• lindermanlab / PPSeq.jl
  Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains
  ☆68Updated 2 years ago
• AllenInstitute / openscope_databook
  OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…
  ☆71Updated 2 months ago
• SjulsonLab / generalized_contrastive_PCA
  Method to find contrastive dimensions between experimental conditions
  ☆22Updated 5 months ago
• Arsha89 / AGC_Analysis
  Extracting neuronal functional network dynamics via adaptive Granger causality analysis
  ☆18Updated 7 years ago
• themattinthehatt / behavenet
  Toolbox for analyzing behavioral videos and neural activity
  ☆59Updated last year
• pillowlab / LNPfitting
  Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
  ☆19Updated 7 years ago
• tjd2002 / tjd-shared-code
  Neuroscience/electrophsyiology data analysis tools (mostly Matlab)
  ☆14Updated 6 years ago
• Olveczky-Lab / FAST
  Fast Automated Spike Tracker
  ☆11Updated 6 years ago
• marius10p / NeuralDataScienceCSHL2019
  Coding exercises for Neural Data Science at CSHL in 2019
  ☆29Updated 5 years ago
• ahwillia / tensortools
  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
  ☆39Updated last year
• PeyracheLab / Class-Decoding
  Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.
  ☆12Updated 5 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• neil-gallagher / CSFA
  Codebase for Cross-Spectral Factor Analysis (Gallagher et al., 2017)
  ☆14Updated 4 years ago
• dougollerenshaw / figrid
  Utilities for formatting matplotlib figures
  ☆31Updated 6 months ago
• nicholas-roy / psytrack
  ☆54Updated 6 months ago
• catalystneuro / roiextractors
  Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…
  ☆14Updated this week
• lindermanlab / warhmm
  ☆12Updated 2 years ago
• gordonberman / MotionMapper
  Sample implementation of the MotionMapper behavioral analysis algorithms
  ☆81Updated 5 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 5 years ago
• AllenInstitute / patchseqtools
  QC and cell type assignment for patch-seq transcriptomics data
  ☆20Updated last year
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 6 years ago
• ShanechiLab / PyPSID
  Preferential Subspace Identification Algorithm
  ☆54Updated 3 months ago
• catniplab / latent_dynamics_workshop
  Exercises and examples for the latent dynamics workshop
  ☆19Updated 2 months ago
• slinderman / ml4nd
  Machine Learning Methods for Neural Data Analysis
  ☆19Updated 4 months ago