attractivechaos / khashl

Related projects: ⓘ

• attractivechaos / udb3
  ☆14Updated 3 months ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 4 years ago
• noporpoise / string_buffer
  libstrbuf: A powerful string library for C
  ☆17Updated 7 years ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆42Updated 10 months ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆25Updated last year
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆83Updated 7 months ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 3 months ago
• jermp / sshash
  A compressed, associative, exact, and weighted dictionary for k-mers.
  ☆83Updated 2 weeks ago
• samtools / htscodecs
  Custom compression for CRAM and others.
  ☆27Updated 2 weeks ago
• IlyaGrebnov / esa-matchfinder
  The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).
  ☆23Updated 9 months ago
• kloetzl / libdna
  ♥ Essential Functions for DNA Manipulation
  ☆20Updated 2 months ago
• noporpoise / carrays
  Algorithms that work on generic C arrays
  ☆10Updated 7 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 2 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆25Updated last week
• biocpp / biocpp-core
  BioC++ core library (alphabet, meta, ranges)
  ☆18Updated last year
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆16Updated 3 months ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆14Updated 3 years ago
• ekg / mmmulti
  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
  ☆27Updated 3 years ago
• noporpoise / jelly-hash
  Low memory multithreaded hash table
  ☆24Updated 9 years ago
• jlabeit / parallel-divsufsort
  Parallel Lightweight Suffix Array Algorithm.
  ☆17Updated 7 years ago
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆23Updated last month
• Malfoy / PAC
  ☆10Updated 6 months ago
• drnatebrown / r-index-f
  R-Index-F Library for Pattern Matching
  ☆13Updated last month
• wang-q / intspan
  Command line tools for IntSpan related bioinformatics operations
  ☆13Updated 3 weeks ago
• davidecenzato / PFP-eBWT
  Implementation of eBWT using Prefix-free parse (PFP)
  ☆12Updated last month
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 7 years ago
• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 3 years ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆10Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago