Alternatives and similar repositories for khashl:

Users that are interested in khashl are comparing it to the libraries listed below

• attractivechaos / udb3
  ☆17Updated 3 weeks ago
• noporpoise / string_buffer
  libstrbuf: A powerful string library for C
  ☆17Updated 8 years ago
• gmarcais / compact_vector
  Bit packed vector of integral values
  ☆27Updated last month
• noporpoise / carrays
  Algorithms that work on generic C arrays
  ☆11Updated 8 years ago
• ocxtal / rbread
  Header-only, gzread-like reader for gzip, bz2, and xz.
  ☆12Updated 6 years ago
• mklarqvist / libflagstats
  Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
  ☆15Updated 5 years ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated last year
• noporpoise / jelly-hash
  Low memory multithreaded hash table
  ☆24Updated 9 years ago
• bingmann / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆84Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 9 months ago
• IlyaGrebnov / esa-matchfinder
  The esa-matchfinder is a C99 library for efficient Lempel-Ziv factorization using enhanced suffix array (ESA).
  ☆23Updated 3 weeks ago
• jermp / sshash
  A compressed, associative, exact, and weighted dictionary for k-mers.
  ☆84Updated 4 months ago
• ekg / mmmulti
  memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
  ☆27Updated 4 years ago
• kloetzl / libmurmurhash
  Portable MurmurHash Implementation
  ☆11Updated last year
• attractivechaos / dlist
  Five implementations of double linked lists to demonstrate generic data structures in C
  ☆15Updated 5 years ago
• kloetzl / libdna
  ♥ Essential Functions for DNA Manipulation
  ☆20Updated 7 months ago
• qwx9 / strangepg
  strange cross-platform, performance-oriented and interactive pangenome and large graph visualization
  ☆16Updated last week
• tommyettinger / waterhash
  Variant on Wang Yi's wyhash with 32-bit output, using at most 64-bit math
  ☆26Updated 5 years ago
• attractivechaos / sann
  Simply feedforward neural network
  ☆19Updated 8 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 8 years ago
• jermp / essentials
  Essential C++ utilities.
  ☆15Updated 8 months ago
• samtools / htscodecs
  Custom compression for CRAM and others.
  ☆31Updated 2 months ago
• farruggia / bc-zip
  Bicriteria Data Compressor
  ☆14Updated 7 years ago
• drnatebrown / r-index-f
  R-Index-F Library for Pattern Matching
  ☆13Updated 6 months ago
• 1ykos / patchmap
  A fast and memory efficient hashmap using sorting to resolve collisions
  ☆43Updated 4 years ago
• dominikkempa / faster-minuter
  Wavelet tree based on a fixed block boosting technique
  ☆16Updated 3 years ago
• biocpp / biocpp-core
  BioC++ core library (alphabet, meta, ranges)
  ☆19Updated last year
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆27Updated last week
• mklarqvist / positional-popcount
  Fast C functions for the computing the positional popcount (pospopcnt).
  ☆53Updated 5 years ago