☆27Oct 11, 2025Updated 6 months ago
Alternatives and similar repositories for udb3
Users that are interested in udb3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generic hash table library in C☆43Jan 2, 2026Updated 3 months ago
- A benchmark for hash tables and hash functions in C++, evaluate on different data as comprehensively as possible☆26Mar 19, 2025Updated last year
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An Evaluation of Linear Probing Hashtable Algorithms☆40Nov 27, 2023Updated 2 years ago
- ☆23Sep 9, 2025Updated 7 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Some zig libraries☆14Sep 5, 2023Updated 2 years ago
- a GFA toolkit☆13Oct 4, 2024Updated last year
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 11 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- ☆19May 10, 2023Updated 2 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 2 years ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Mar 29, 2020Updated 6 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Efficient construction of the BWT using string compression☆22Mar 17, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple cross-platform speed & memory-efficiency benchmark for the most common hash-table implementations in the C++ world☆12Dec 9, 2022Updated 3 years ago
- A collection of C containers for programmers that need complete control over memory allocation.☆19Updated this week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 4 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆41Mar 9, 2026Updated last month
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- C++11 memory allocator based on memory pools. It offers fast and efficient allocation of a large number of small-size objects.☆11Sep 2, 2022Updated 3 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated last week
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 3 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- A library for resolution-independent rendering of hardware-accelerated vector graphics directly on the GPU.☆17Jul 31, 2018Updated 7 years ago
- my PhD thesis☆36Jul 10, 2019Updated 6 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 4 years ago