☆29Oct 11, 2025Updated last year
Alternatives and similar repositories for udb3
Users that are interested in udb3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generic hash table library in C☆47Jan 2, 2026Updated 10 months ago
- A benchmark for hash tables and hash functions in C++, evaluate on different data as comprehensively as possible☆25Jun 16, 2026Updated 4 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- ☆11Sep 11, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A comparative, extendable benchmarking suite for C and C++ hash-table libraries.☆47Jun 1, 2024Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- ☆25Sep 22, 2026Updated last month
- a GFA toolkit☆13Oct 4, 2024Updated 2 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 8 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 11 months ago
- Standalone version of the boost::unordered library☆41Apr 23, 2026Updated 6 months ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- ☆12Updated this week
- An Evaluation of Linear Probing Hashtable Algorithms☆40Nov 27, 2023Updated 2 years ago
- ☆14Jul 30, 2026Updated 3 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Port of Verstable from C to Zig. Verstable is one of the leading C/C++ hash table in speed but is quirky to use. With zig's comptime we g…☆15Dec 29, 2025Updated 10 months ago
- ☆32Dec 16, 2022Updated 3 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Oct 23, 2026Updated 2 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 3 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Mar 29, 2020Updated 6 years ago
- For details, see the blog post:☆35Dec 14, 2023Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- mreps: software for tandem repeat identification in DNA☆16Nov 13, 2019Updated 6 years ago
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- ☆14Oct 14, 2020Updated 6 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- GBZ file format for pangenome graphs☆48Updated this week
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 2 months ago