attractivechaos / udb3
☆17Updated 3 weeks ago
Alternatives and similar repositories for udb3:
Users that are interested in udb3 are comparing it to the libraries listed below
- Generic hash table library in C☆28Updated last month
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- Bit packed vector of integral values☆27Updated last month
- Algorithms that work on generic C arrays☆11Updated 8 years ago
- libstrbuf: A powerful string library for C☆17Updated 8 years ago
- Low memory multithreaded hash table☆24Updated 9 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- A fast and memory efficient hashmap using sorting to resolve collisions☆43Updated 4 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Five implementations of double linked lists to demonstrate generic data structures in C☆15Updated 5 years ago
- Fast C functions for the computing the positional popcount (pospopcnt).☆53Updated 5 years ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated 4 months ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 9 months ago
- Fast C header-only library for popcnt, pospopcnt, and set algebraic operations☆45Updated 5 years ago
- A (Minimal) Perfect Hash Function based on irregular cuckoo hashing, retrieval, and overloading.☆19Updated 3 months ago
- A simple bitset library in C☆132Updated last week
- Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays☆10Updated this week
- A versatile, performance-oriented generic hash table library for C.☆105Updated 7 months ago
- For details, see the blog post:☆32Updated last year
- Variant on Wang Yi's wyhash with 32-bit output, using at most 64-bit math☆26Updated 5 years ago
- A hash map using the BooPHF perfect hash function☆12Updated 8 years ago
- Lightweight header-only C++ library for loading and traversing trees☆11Updated 2 months ago
- Fast and cache-efficient full-text pangenome index☆27Updated last week
- ☆12Updated last year
- Efficient construction of the BWT using string compression☆17Updated 4 months ago
- ♥ Essential Functions for DNA Manipulation☆20Updated 7 months ago
- A benchmark for sorting algorithms☆59Updated 3 years ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆16Updated 2 weeks ago
- ☆10Updated last year