Alternatives and similar repositories for siRNAdesigner

Users that are interested in siRNAdesigner are comparing it to the libraries listed below

• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆37Updated 5 months ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆19Updated 9 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• PKUliujl / GeoSeqBuilder
  ☆29Updated 9 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆32Updated last year
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆49Updated last year
• zeysun / AntiBMPNN
  Repo of AntiBMPNN project for antibody sequence design.
  ☆20Updated 5 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆29Updated last year
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 8 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆59Updated 9 months ago
• regeneron-mpds / propermab
  ☆37Updated 7 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆31Updated last year
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆24Updated 11 months ago
• csi-greifflab / developability_profiling
  ☆25Updated 2 months ago
• Wublab / pythia_ppi
  PPI version of Pythia
  ☆22Updated 2 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 4 months ago
• Fleishman-Lab / CUMAb
  ☆20Updated 7 months ago
• jishnu-lab / SWING
  ☆28Updated 2 months ago
• bene837 / af2seq
  ☆44Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆99Updated 3 months ago
• jkwang93 / AMP-Designer
  A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery
  ☆43Updated 2 months ago
• Sanofi-Public / LMR-SurfaceID
  Repo contains source code of the SurfaceID paper
  ☆26Updated last year
• lcbc-epfl / metal-site-prediction
  ☆41Updated last year
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated last month
• jbderoo / PAbFold
  Epitope Prediction Pipeline and analysis tools built around AlphaFold 2
  ☆20Updated last year
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆22Updated 7 months ago