anazhmetdin / siRNAdesigner
python script that picks suitable targets for siRNA with off-target optimization
☆16Updated 3 years ago
Alternatives and similar repositories for siRNAdesigner:
Users that are interested in siRNAdesigner are comparing it to the libraries listed below
- ☆19Updated last week
- ☆49Updated 3 weeks ago
- ☆39Updated 3 weeks ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆18Updated 2 months ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆18Updated 11 months ago
- Making Protein folding accessible to all!☆22Updated last year
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 8 months ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆26Updated 3 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆25Updated 9 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery☆26Updated last week
- ☆26Updated this week
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- Repo contains source code of the SurfaceID paper☆22Updated last year
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆23Updated 5 years ago
- An accurate and efficient protein sequence design approach☆24Updated last month
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆28Updated 10 months ago
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆32Updated 3 months ago
- ☆26Updated 10 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆22Updated last year
- ☆26Updated 8 months ago
- Fragment binding prediction with ColabFold☆33Updated last month
- An antibody-specific language model focusing on NGL prediction☆26Updated 8 months ago
- ☆22Updated 3 weeks ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆36Updated 6 months ago
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆25Updated 5 months ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆20Updated 5 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆7Updated last year