python script that picks suitable targets for siRNA with off-target optimization
☆16Oct 23, 2021Updated 4 years ago
Alternatives and similar repositories for siRNAdesigner
Users that are interested in siRNAdesigner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting siRNA activity with machine learning☆26Aug 27, 2019Updated 6 years ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆20Nov 22, 2022Updated 3 years ago
- ☆24Apr 10, 2025Updated last year
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 3 years ago
- Polyreactivity Website☆22Jun 26, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scores for Hydrophobicity and Charges based on SASAs☆43Jun 12, 2025Updated 11 months ago
- Code for the antibody deep learning paper.☆16Feb 28, 2022Updated 4 years ago
- ☆43Apr 30, 2024Updated 2 years ago
- Program to find drug-like RNA-ligand binding pockets.☆25May 26, 2026Updated last week
- Collection of tools to calculate properties of natural or synthetic peptides and proteins.☆73Apr 13, 2026Updated last month
- PPI version of Pythia☆35Apr 15, 2026Updated last month
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Mar 18, 2023Updated 3 years ago
- init commit☆17Oct 31, 2023Updated 2 years ago
- Tool for modelling the CDRs of antibodies☆51Jan 19, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆25May 14, 2019Updated 7 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆29Jul 7, 2023Updated 2 years ago
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆17Dec 16, 2024Updated last year
- Collisional cross-section prediction for modified and multiconformational peptides☆13Apr 14, 2026Updated last month
- An end-to-end linear-time algorithm for structural alignment and conserved structure prediction of RNA homologs☆13Jun 28, 2024Updated last year
- RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding☆44Nov 20, 2025Updated 6 months ago
- ☆10Feb 18, 2020Updated 6 years ago
- ☆30Apr 2, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆20Oct 4, 2022Updated 3 years ago
- ☆31Aug 16, 2025Updated 9 months ago
- ☆42Jul 28, 2025Updated 10 months ago
- Cloud GPU supported NAMD3-based binding free energy difference between two small molecules against the same protein target. This is prob…☆29Nov 2, 2025Updated 7 months ago
- Examples of applications of pymbar to various problems in simulation and experiment☆23Jan 16, 2015Updated 11 years ago
- The code for running the analysis component of CSI-Microbe☆11Jan 3, 2024Updated 2 years ago
- ☆11May 22, 2024Updated 2 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- The LinearDesign mRNA design software.☆211Jun 4, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An antibody-specific language model focusing on NGL prediction☆44Aug 22, 2024Updated last year
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- ☆51Oct 31, 2025Updated 7 months ago
- open source repository☆148Nov 30, 2023Updated 2 years ago
- ☆13Mar 28, 2025Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆31Jul 8, 2024Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆49Nov 4, 2025Updated 7 months ago