Alternatives and similar repositories for siFi21-:

Users that are interested in siFi21- are comparing it to the libraries listed below

• YangLab / CIRCexplorer2
  circular RNA analysis toolset
  ☆81Updated 7 months ago
• XWangLabTHU / cfDNApipe
  cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
  ☆65Updated 2 years ago
• xjtu-omics / msisensor-pro
  Microsatellite Instability (MSI) detection using high-throughput sequencing data.
  ☆108Updated 3 weeks ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆62Updated 9 months ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 2 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆80Updated 4 months ago
• fengzhanglab / Screening_Protocols_manuscript
  Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
  ☆49Updated 7 years ago
• RabadanLab / arcasHLA
  Fast and accurate in silico inference of HLA genotypes from RNA-seq
  ☆127Updated 8 months ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆76Updated 3 years ago
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆58Updated 7 months ago
• OpenGene / ctdna-pipeline
  A simplified pipeline for ctDNA sequencing data analysis
  ☆36Updated 7 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 6 months ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆31Updated 4 years ago
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆48Updated 5 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆48Updated last year
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆29Updated 3 years ago
• bioinform / rnacocktail
  ☆89Updated 4 years ago
• OSU-SRLab / MANTIS
  Microsatellite Analysis for Normal-Tumor InStability
  ☆69Updated 2 years ago
• FoundationMedicineInc / SGZ
  ☆41Updated last year
• likelet / LncPipe
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆82Updated 2 years ago
• virajbdeshpande / AmpliconArchitect
  AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …
  ☆145Updated 10 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆24Updated 2 months ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆110Updated 7 months ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆65Updated this week
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago
• sztup / scarHRD
  ☆115Updated last year
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆104Updated last year
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆77Updated last year
• nccl-jmli / VarBen
  ☆36Updated 4 years ago