PPI Affinity Prediction
☆12Nov 15, 2025Updated 11 months ago
Alternatives and similar repositories for PPAP
Users that are interested in PPAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Aug 28, 2024Updated 2 years ago
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 6 months ago
- A fast sampling and analysis tool for biomolecules☆18Aug 2, 2026Updated 2 months ago
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Apr 13, 2026Updated 6 months ago
- ☆16Mar 5, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code and demos corresponding to our paper:"Accurate Pocket Identification for Binding-Site-Agnostic Docking", https://arxiv.org/abs/2502.…☆11Apr 24, 2026Updated 6 months ago
- ☆32Aug 26, 2025Updated last year
- Pharmacon: A Molecular Dynamics Analysis Toolkit☆25Oct 5, 2026Updated 2 weeks ago
- ☆14Aug 29, 2024Updated 2 years ago
- MTPNet: Multi-Grained Target Perception for Unified Activity Cliff Prediction☆14May 19, 2025Updated last year
- ☆21Aug 31, 2026Updated last month
- Baseline model for PPB-Affinity benchmark data☆44May 21, 2025Updated last year
- Scoring methods for predicting the DDG upon protein mutation☆18Feb 20, 2023Updated 3 years ago
- ☆15Sep 4, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Jan 5, 2024Updated 2 years ago
- P2PXML: Deep Geometric Framework to Predict Antibody-Antigen Binding Affinity (Journal of Structural Biology)☆15Feb 24, 2026Updated 8 months ago
- ☆16Aug 3, 2023Updated 3 years ago
- Geometry-aware protein binding site predictor☆31Aug 29, 2024Updated 2 years ago
- Clustering tool for biomolecular structural ensembles and data in general.☆10Aug 24, 2020Updated 6 years ago
- [ICLR 2025] CheapNet: Cross-attention on Hierarchical representations for Efficient protein-ligand binding Affinity Prediction☆13Mar 13, 2025Updated last year
- ☆25Jul 22, 2025Updated last year
- Protein-protein binding affinity benchmark☆20Feb 14, 2025Updated last year
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb …☆18Jun 30, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Jul 14, 2024Updated 2 years ago
- Optimization tool for calibrating coarse-grained force fields of lipids, relying on the simultaneous usage of reference AA trajectories (…☆10Jun 6, 2023Updated 3 years ago
- A graph transformer-based approach for drug-target interaction prediction☆16Jan 31, 2024Updated 2 years ago
- Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide☆30Mar 30, 2023Updated 3 years ago
- De novo design of small molecule binding sites into proteins☆11Apr 14, 2021Updated 5 years ago
- Graph neural network for modeling multispecific antibody functional data☆14Feb 2, 2026Updated 8 months ago
- Protein design and sculpting using Rosetta and Deep learning methods (RFDiff and Alphafold2)☆73Updated this week
- A versatile workflow for the generation of receptor-based pharmacophore models for virtual screening☆33May 22, 2025Updated last year
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆47Nov 8, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆59Jul 22, 2025Updated last year
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Multi-Task Topological Laplacian deep learning model that predicts binding free energy changes upon mutation☆14Dec 13, 2024Updated last year
- Repo contains source code of the SurfaceID paper☆30Mar 13, 2024Updated 2 years ago
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated 2 years ago
- AI-native molecular docking framework unified with site binding, conformation sampling and scoring☆21Oct 14, 2026Updated last week
- Identifying amino acids important to AlphaFold!☆11Updated this week