Alternatives and similar repositories for jupyter-o2

Users that are interested in jupyter-o2 are comparing it to the libraries listed below

• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆130Updated last year
• chrelli / bioRxiv-word-template
  MS Word template for styling a manuscript for a bioRxiv submission
  ☆45Updated 6 years ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆86Updated 3 months ago
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 8 years ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆53Updated this week
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆105Updated 7 years ago
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆120Updated 3 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 3 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆76Updated 3 months ago
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆52Updated 7 years ago
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated 11 months ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 7 years ago
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 5 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated 2 years ago
• schlegelp / bioRxiv-LaTeX-template
  LaTeX template to create a compiled PDF (text+figures) e.g. for bioRxiv.org
  ☆21Updated 9 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆74Updated 3 years ago
• ArcInstitute / ScreenPro2
  Flexible analysis of high-content CRISPR screening
  ☆30Updated 5 months ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆28Updated last month
• g-kl / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated last year
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆41Updated 4 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• stanleyn / Comp790-166-Comp-Bio
  Computational Biology- Spring 2021
  ☆48Updated 4 years ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆161Updated last month
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆56Updated 6 years ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆240Updated last month
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆83Updated last year
• Dongwon-Lee / lsgkm
  ☆51Updated 2 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆62Updated 2 weeks ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆56Updated 10 months ago