Alternatives and similar repositories for jupyter-o2:

Users that are interested in jupyter-o2 are comparing it to the libraries listed below

• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 3 years ago
• jmschrei / bpnet-lite
  This repository hosts a minimal version of a Python API for BPNet.
  ☆37Updated 3 weeks ago
• chrelli / bioRxiv-word-template
  MS Word template for styling a manuscript for a bioRxiv submission
  ☆38Updated 6 years ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆71Updated last month
• nfusi / qvalue
  Converts p-values in q-values, see (Storey and Tibshirani, 2003)
  ☆29Updated 7 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆69Updated 2 years ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆40Updated 3 weeks ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆24Updated 11 months ago
• finkelsteinlab / BioRxiv-Template
  MS Word templates for a more readable BioRxiv product
  ☆23Updated 6 years ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• feldman4 / OpticalPooledScreens_2019
  Examples and code for optical pooled screens
  ☆10Updated 2 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆49Updated last month
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆31Updated last week
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆45Updated 5 years ago
• cole-trapnell-lab / worm-rna
  The C. elegans transcriptome at single cell resolution
  ☆11Updated 7 years ago
• ushaham / BatchEffectRemoval
  ☆55Updated 5 years ago
• klarman-cell-observatory / scPhere
  ☆98Updated 2 years ago
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆13Updated last week
• statbiophys / soNNia
  ☆14Updated this week
• fraenkel-lab / OmicsIntegrator
  This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a n…
  ☆31Updated 6 years ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆30Updated last week
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆51Updated 3 years ago
• weallen / STARmap
  Software for processing and analyzing STARmap experiments.
  ☆36Updated 5 years ago
• kundajelab / basepairmodels
  ☆16Updated 2 years ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆46Updated this week