lrsoenksen / HAIMLinks
This repository contains the code to replicate the data processing, modeling and reporting of our Holistic AI in Medicine (HAIM) Publication in Nature Machine Intelligence (Soenksen LR, Ma Y, Zeng C et al. 2022).
☆126Updated 2 years ago
Alternatives and similar repositories for HAIM
Users that are interested in HAIM are comparing it to the libraries listed below
Sorting:
- Training HuggingFace models on EHR data☆26Updated 3 weeks ago
- ☆71Updated 3 months ago
- Python workflow for generating benchmark datasets and machine learning models from the MIMIC-IV-ED database.☆83Updated 2 years ago
- source codes based on PyTorch to analyze EHR☆140Updated last year
- 🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datase…☆72Updated this week
- Code for BEHRT: Transformer for Electronic Health Records☆111Updated 2 years ago
- ☆81Updated 2 years ago
- Repository for the HiRID ICU Benchmark (HiB) project☆57Updated last year
- SurvTRACE: Transformers for Survival Analysis with Competing Events☆54Updated last year
- FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…☆144Updated this week
- A customizable pipeline for data extraction from MIMIC-IV.☆237Updated last year
- A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction☆33Updated 2 years ago
- ☆90Updated 9 months ago
- ☆39Updated last year
- Multimodal deep learning model for long-term cancer survival prediction☆81Updated 3 years ago
- A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.☆150Updated 3 months ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Records☆63Updated last week
- circEWS public code☆69Updated 7 months ago
- A collection of ETLs from common data formats to Medical Event Data Standard☆31Updated 3 weeks ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data☆62Updated last month
- A simple set of MEDS polars-based ETL and transformation functions☆33Updated 2 weeks ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆94Updated last year
- ☆13Updated 3 years ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆38Updated 4 months ago
- OMOP standardization pipeline for ICU databases☆42Updated 4 months ago
- PreOpNet is an ECG-waveform based architecture for prediction of post-operative mortality and MACE☆3Updated 4 months ago
- Code repository to create the MIMIC-CDM Dataset.☆35Updated 4 months ago
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"☆113Updated last year
- [ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams☆33Updated 3 weeks ago
- Experiments applying FIDDLE on MIMIC-III and eICU. https://doi.org/10.1093/jamia/ocaa139☆24Updated 2 years ago