bvanaken / clinical-outcome-prediction
Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
☆93Updated 8 months ago
Alternatives and similar repositories for clinical-outcome-prediction:
Users that are interested in clinical-outcome-prediction are comparing it to the libraries listed below
- ☆38Updated 3 years ago
- auto icd coding with prompt☆49Updated 11 months ago
- ☆59Updated last year
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆159Updated 3 years ago
- A collection of papers on automated medical coding from free-texts☆137Updated 3 months ago
- Pre-trained word embeddings using the text of published clinical case reports.☆14Updated 5 years ago
- ☆22Updated 3 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆28Updated last year
- ☆36Updated last year
- ☆98Updated 3 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 5 months ago
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- ☆80Updated 7 months ago
- Blog post on Medium☆49Updated 2 years ago
- A Label Attention Model for ICD Coding from Clinical Text☆69Updated 2 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Predicting ICD Codes from Clinical Notes☆60Updated 4 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆187Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆281Updated last year
- Transformers for Clinical NLP☆24Updated 2 months ago
- Patient Code & Text Representation Learning☆20Updated last year
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆269Updated last year
- UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge☆13Updated last year