bvanaken / clinical-outcome-prediction
Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration
☆95Updated 9 months ago
Alternatives and similar repositories for clinical-outcome-prediction:
Users that are interested in clinical-outcome-prediction are comparing it to the libraries listed below
- ☆38Updated 3 years ago
- auto icd coding with prompt☆49Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- ☆37Updated last year
- A Label Attention Model for ICD Coding from Clinical Text☆69Updated 2 years ago
- ☆59Updated last year
- A collection of papers on automated medical coding from free-texts☆139Updated 4 months ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- ☆22Updated 3 years ago
- Pre-trained word embeddings using the text of published clinical case reports.☆14Updated 5 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆26Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆28Updated last year
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆92Updated 10 months ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 6 months ago
- ☆85Updated 8 months ago
- Predicting ICD Codes from Clinical Notes☆61Updated 4 years ago
- Blog post on Medium☆49Updated 2 years ago
- ☆98Updated 3 years ago
- ☆152Updated last year
- Transformers for Clinical NLP☆24Updated last week
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- Code for BEHRT: Transformer for Electronic Health Records☆109Updated 2 years ago
- General tutorials for the setup and use of MedCAT.☆37Updated 2 weeks ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…☆45Updated last year
- Med-BERT, contextualized embedding model for structured EHR data☆283Updated last year