Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objective function.
☆22Mar 29, 2021Updated 5 years ago
Alternatives and similar repositories for elaspic2
Users that are interested in elaspic2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scripts and facilities for in-silico mutagenesis with FoldX☆71Mar 9, 2026Updated 7 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆31Jun 10, 2023Updated 3 years ago
- ☆11May 12, 2026Updated 5 months ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆17Sep 27, 2022Updated 4 years ago
- Self-Consistent Neural Network for Protein Stability Prediction upon Mutations☆10Sep 22, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predicting the effect of mutations on protein stability and protein-protein interaction affinity.☆10Mar 29, 2021Updated 5 years ago
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15May 24, 2018Updated 8 years ago
- iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machi…☆31Jun 25, 2022Updated 4 years ago
- pymol implementation of WaterDock with Akshay Sridhar (@akshay-sridhar) and refactoring work by Patrick McCubbin (@mccubbinp)☆11Mar 25, 2024Updated 2 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- ☆12Jun 3, 2025Updated last year
- Sequence-based protein solubility prediction using multidimensional embedding☆12Apr 19, 2021Updated 5 years ago
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 5 years ago
- ☆98Nov 25, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Auxiliary tools for automated atomistic and coarse-grained molecular dynamics simulations using gromacs☆11Apr 23, 2021Updated 5 years ago
- ☆13Updated this week
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆32Mar 19, 2023Updated 3 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 3 years ago
- ☆17May 14, 2022Updated 4 years ago
- Protein interaction calculator☆16Feb 11, 2025Updated last year
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆29May 23, 2018Updated 8 years ago
- Model-based clustering package for mixed data☆13May 21, 2026Updated 5 months ago
- Lightweight induced fit docking☆22May 22, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆56May 2, 2022Updated 4 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- Fast computation of Distance Correlation and Distance Covariance in R☆10Sep 27, 2023Updated 3 years ago
- Deep learning architectures for protein secondary structure prediction (version 2)☆11Mar 24, 2023Updated 3 years ago
- Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems☆21Oct 11, 2021Updated 5 years ago
- DeepSoluE☆18Sep 18, 2023Updated 3 years ago
- GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling☆21Sep 7, 2024Updated 2 years ago
- Constraint-based Metabolic Modeling Course☆13Jul 25, 2022Updated 4 years ago
- gromacs(Protein-Ligand Complex)☆11Sep 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 6 years ago
- WaterDock-2.0 implementation with Akshay Sridhar☆21Nov 2, 2023Updated 3 years ago
- An integrated framework for chemical reaction feasibility prediction. This is a structured solution for one of the Chemistry Challenges o…☆12May 31, 2022Updated 4 years ago
- Tool for estimating growth rates from microbial growth curves☆32Feb 4, 2026Updated 9 months ago
- SPRINT: Scoring PRotein INTeractions☆17Aug 11, 2020Updated 6 years ago
- Protocol to redesign enzyme sequences for stability and expression followed in Krasnow et. al. 2025 (). Developed using ProteinMPNN (Daup…☆21May 11, 2026Updated 5 months ago
- Mutation tracker for microbial genomes☆14Sep 30, 2020Updated 6 years ago