snap-stanford / planetLinks
PlaNet: Predicting population response to drugs via clinical knowledge graph
☆32Updated 4 months ago
Alternatives and similar repositories for planet
Users that are interested in planet are comparing it to the libraries listed below
Sorting:
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆32Updated this week
- Similarity search in heterogeneous knowledge graphs using meta paths.☆27Updated 2 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆23Updated this week
- SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases☆69Updated last month
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Updated last month
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆16Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆72Updated 4 months ago
- ☆25Updated 2 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- MILTON: Disease prediction with biomarkers and augmented PheWAS analyses☆37Updated 10 months ago
- A resource of adverse drug effects extracted from FDA structured product labels☆81Updated last month
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated 2 weeks ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 2 months ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 9 months ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 6 years ago
- A deep-learning framework for multi-omics integration☆26Updated 2 years ago
- SUPREME: A GCN based approach for cancer subtype prediction☆18Updated last year
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆28Updated 2 months ago
- ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine☆63Updated last month
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆49Updated 6 months ago
- Source code for the R package, "dbparser" (i.e. DrugBank Parser)☆61Updated last year
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Updated 2 years ago
- ☆18Updated last year
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- Generating biologically informed neural networks☆48Updated 6 months ago
- Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"☆43Updated 2 years ago
- ☆34Updated 6 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 8 months ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago