Alternatives and similar repositories for planet

Users that are interested in planet are comparing it to the libraries listed below

• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆45Updated 2 years ago
• biocypher / clinical-knowledge-graph
  ☆18Updated 11 months ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆54Updated 9 months ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• AnacletoLAB / RNA-KG
  ☆23Updated 6 months ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆23Updated 7 months ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆26Updated 2 years ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• hms-dbmi / Drug_Explorer
  Interactive & explainable GNN for drug repurposing
  ☆12Updated last year
• mims-harvard / PDGrapher
  Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
  ☆25Updated 3 weeks ago
• RTXteam / RTX-KG2
  Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)
  ☆41Updated last month
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• mims-harvard / Clinical-knowledge-embeddings
  ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine
  ☆58Updated last month
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 2 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆69Updated 2 months ago
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆9Updated 4 years ago
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆17Updated last year
• bowang-lab / genomic-FM
  ☆25Updated last month
• ninglab / CTKG
  The Clinical Trials Knowledge Graph
  ☆57Updated 2 years ago
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆26Updated last year
• Case-esaC / iDrug
  ☆19Updated 5 years ago
• SuLab / DrugMechDB
  A database of paths that represent the mechanism of action from a drug to a disease in an indication.
  ☆63Updated 3 weeks ago
• snap-stanford / multiscale-interactome
  ☆66Updated last year
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆40Updated last year
• SaccoPerfettoLab / SignalingProfiler
  SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.
  ☆13Updated last week
• ckoenigs / PharMeBINet
  Build PharMeBINet from different sources.
  ☆16Updated 2 months ago
• AstraZeneca / skywalkR-graph-features
  Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including rec…
  ☆11Updated 3 years ago
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated this week
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated last week