rafiattrach / m3Links
π₯π€ Query MIMIC-IV medical data using natural language through Model Context Protocol (MCP). Transform healthcare research with AI-powered database interactions - supports both local MIMIC-IV SQLite demo dataset and full BigQuery datasets.
β64Updated last week
Alternatives and similar repositories for m3
Users that are interested in m3 are comparing it to the libraries listed below
Sorting:
- Python package for machine learning for healthcare using a OMOP common data modelβ111Updated 2 years ago
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admittβ¦β87Updated last month
- Winners of the SNOMED CT Entity Linking Challengeβ43Updated last year
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41β¦β48Updated last year
- β66Updated 4 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ94Updated last month
- Deep Generative Modelling of Patient Timelines using Electronic Health Recordsβ69Updated 6 months ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.β70Updated 7 months ago
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β97Updated 6 months ago
- General tutorials for the setup and use of MedCAT.β41Updated 7 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatlyβ¦β29Updated 8 years ago
- β55Updated 5 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inferenceβ30Updated last year
- An R package for performing various cohort diagnostics.β47Updated 3 months ago
- Mapping the MIMIC-III database to the OMOP schemaβ143Updated last year
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agaiβ¦β73Updated last week
- Open source clinical text de-identificationβ146Updated last year
- ETL Tool for converting datasets to OMOP CDMβ35Updated 3 years ago
- A simple set of MEDS polars-based ETL and transformation functionsβ39Updated last month
- β12Updated last month
- A collection of ETLs from common data formats to Medical Event Data Standardβ37Updated 4 months ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacyβ100Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenizationβ31Updated last year
- public code repository for paper "Health system scale language models are general purpose clinical prediction engines"β120Updated 2 years ago
- A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)β205Updated 6 months ago
- β29Updated 4 years ago
- Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Recordsβ24Updated 5 years ago
- Anonymize Medical Documents using LLMsβ54Updated last year
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Researchβ89Updated 2 years ago
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenDataβ14Updated last year