rafiattrach / m3Links
π₯π€ Query MIMIC-IV medical data using natural language through Model Context Protocol (MCP). Transform healthcare research with AI-powered database interactions - supports both local MIMIC-IV SQLite demo dataset and full BigQuery datasets.
β57Updated 2 weeks ago
Alternatives and similar repositories for m3
Users that are interested in m3 are comparing it to the libraries listed below
Sorting:
- MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admittβ¦β86Updated last week
- Python package for machine learning for healthcare using a OMOP common data modelβ110Updated 2 years ago
- Winners of the SNOMED CT Entity Linking Challengeβ42Updated last year
- FlexIble Data-Driven pipeLinE β a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algoβ¦β97Updated 4 months ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatlyβ¦β29Updated 8 years ago
- Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims dataβ86Updated 2 weeks ago
- Deep Generative Modelling of Patient Timelines using Electronic Health Recordsβ65Updated 5 months ago
- β66Updated 4 years ago
- Mapping the MIMIC-III database to the OMOP schemaβ143Updated last year
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.β70Updated 6 months ago
- General tutorials for the setup and use of MedCAT.β40Updated 5 months ago
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databaβ¦β14Updated 8 months ago
- eds-scikit is a Python library providing tools to process and analyse OMOP dataβ43Updated 11 months ago
- A simple set of MEDS polars-based ETL and transformation functionsβ36Updated 2 weeks ago
- An R package for performing various cohort diagnostics.β47Updated 2 months ago
- β29Updated 4 years ago
- Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41β¦β48Updated last year
- A collection of ETLs from common data formats to Medical Event Data Standardβ36Updated 3 months ago
- ETL Tool for converting datasets to OMOP CDMβ33Updated 2 years ago
- A toolkit for evaluating and monitoring AI models in clinical settingsβ87Updated this week
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agaiβ¦β71Updated 3 weeks ago
- Open source clinical text de-identificationβ144Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inferenceβ30Updated last year
- Installing MIMIC-IV in a local Postgres databaseβ43Updated 4 years ago
- Training materials for Vocabulary & CDM Tutorial.β22Updated 6 years ago
- Website for the MIMIC Critical Care Database (currently version MIMIC-III)β121Updated last month
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysisβ33Updated last year
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916β189Updated 2 weeks ago
- β12Updated this week
- Weak supervision methods for extracting real world evidence from EHRsβ34Updated 5 years ago