Alternatives and similar repositories for m3

Users that are interested in m3 are comparing it to the libraries listed below

• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆84Updated last week
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆85Updated 2 months ago
• lisavirginia / clinical-abbreviations
  ☆66Updated 4 years ago
• CogStack / MedCATtutorials
  General tutorials for the setup and use of MedCAT.
  ☆40Updated 5 months ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆96Updated 4 months ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆47Updated last month
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆42Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆70Updated 5 months ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆48Updated last year
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆143Updated last year
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• asappresearch / clip
  ☆29Updated 4 years ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆142Updated last year
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆64Updated 4 months ago
• ohdsi-studies / LegendT2dm
  ☆12Updated 5 months ago
• OHDSI / Tutorial-CDM
  Training materials for Vocabulary & CDM Tutorial.
  ☆22Updated 6 years ago
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆33Updated 2 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆70Updated last month
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• aphp / eds-scikit
  eds-scikit is a Python library providing tools to process and analyse OMOP data
  ☆43Updated 10 months ago
• OHDSI / Apollo
  [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)
  ☆14Updated last year
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆43Updated last year
• som-shahlab / ehrshot-benchmark
  A benchmark for few-shot evaluation of foundation models for electronic health records (EHRs)
  ☆196Updated 4 months ago
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆36Updated 2 months ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆32Updated last year
• yikuan8 / MIMIC-IV-Postgres
  Installing MIMIC-IV in a local Postgres database
  ☆42Updated 4 years ago
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆38Updated 5 years ago
• som-shahlab / femr
  FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health record…
  ☆156Updated last week