Alternatives and similar repositories for ETL-UK-Biobank

Users that are interested in ETL-UK-Biobank are comparing it to the libraries listed below

• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆29Updated 4 years ago
• spiros / phemap
  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
  ☆36Updated 2 years ago
• bjcairns / ukbschemas
  Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi
  ☆20Updated 4 years ago
• philipdarke / ukbb-ehr-data
  Prepare UK Biobank Electronic Health Record data for research
  ☆28Updated 2 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆49Updated last year
• spiros / ukb-biomarker-phenotypes
  Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
  ☆25Updated 4 years ago
• OHDSI / OMOP-Queries
  ☆28Updated 7 years ago
• PhilAppleby / ukbb-srmed
  Text matching UK Biobank Self-Reported medication descriptions for medication classification
  ☆26Updated 3 years ago
• OHDSI / InspectOMOP
  InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…
  ☆14Updated 5 months ago
• jbadger3 / inspectomop
  ☆14Updated 5 months ago
• BenGlicksberg / ROMOP
  R package to easily interface with OMOP-formatted EHR data.
  ☆36Updated 5 years ago
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆52Updated 2 years ago
• roux-ohdsi / allofus
  R package to streamline use of the AllofUs researcher workbench
  ☆17Updated 3 months ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆62Updated 2 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆18Updated this week
• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 8 months ago
• OHDSI / Tutorial-CDM
  Training materials for Vocabulary & CDM Tutorial.
  ☆21Updated 5 years ago
• NUSCRIPT / OMOP_to_Graph
  Transform the OMOP model to graph model
  ☆23Updated 7 months ago
• thehyve / ukbiobank-omop-etl
  Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion
  ☆9Updated 4 years ago
• snap-stanford / planet
  PlaNet: Predicting population response to drugs via clinical knowledge graph
  ☆32Updated 4 months ago
• all-of-us / ukb-cross-analysis-demo-project
  Workbench demo project: cross-analysis of AoU and UKB.
  ☆13Updated 2 years ago
• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆21Updated 4 years ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆40Updated 4 years ago
• BaderLab / netDx
  R package with netDx software and data for examples
  ☆12Updated 2 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆89Updated last year
• OHDSI / StudyProtocolSandbox
  This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.
  ☆33Updated 2 months ago
• emreg00 / proximity
  Drug-disease proximity based therapeutic effect screening and analysis
  ☆19Updated 7 years ago
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆57Updated last week
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 4 years ago
• ltscomputingllc / faersdbstats
  Generate safety signal statistics from FDA FAERS data
  ☆49Updated last year