EHDEN / ETL-UK-BiobankLinks
ETL UK-Biobank
☆14Updated 2 years ago
Alternatives and similar repositories for ETL-UK-Biobank
Users that are interested in ETL-UK-Biobank are comparing it to the libraries listed below
Sorting:
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆28Updated 4 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated 7 months ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆35Updated 2 years ago
- Prepare UK Biobank Electronic Health Record data for research☆26Updated 2 years ago
- Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi☆20Updated 4 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆25Updated 3 years ago
- Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.☆48Updated 11 months ago
- Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank☆24Updated 4 years ago
- Python scripts to extract and pre-process UKB data☆32Updated 6 years ago
- https://celehs.github.io/PheCAP/☆21Updated 4 years ago
- An R package for evaluating phenotype algorithms.☆18Updated 8 months ago
- R package to streamline use of the AllofUs researcher workbench☆16Updated last month
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆88Updated last year
- R package to easily interface with OMOP-formatted EHR data.☆36Updated 5 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆9Updated 4 years ago
- ☆27Updated 6 years ago
- Transform the OMOP model to graph model☆22Updated 6 months ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 4 years ago
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆51Updated 2 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆29Updated 3 months ago
- ☆14Updated 3 months ago
- ukbREST: efficient and streamlined data access for reproducible research of large biobanks☆39Updated 3 years ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆32Updated 2 weeks ago
- An R package for performing various cohort diagnostics.☆46Updated last week
- Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch☆12Updated 3 years ago
- Generate safety signal statistics from FDA FAERS data☆49Updated last year
- HDR UK National Phenotype Library☆22Updated 2 years ago
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆47Updated 2 months ago
- Repository for development of the genomic module of the CDM.☆20Updated 6 years ago
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 5 years ago