eds-scikit is a Python library providing tools to process and analyse OMOP data
☆45Dec 19, 2024Updated last year
Alternatives and similar repositories for eds-scikit
Users that are interested in eds-scikit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Pyth…☆11Jan 21, 2026Updated 4 months ago
- Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.☆165Updated this week
- Modular Python framework for building customizable annotation interfaces: text, images, and spreadsheet-style data.☆31Updated this week
- PyTorch extension for handling deeply nested sequences of variable length☆15Mar 19, 2026Updated 2 months ago
- A web application to find patients, build cohorts and visualize health records☆55Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Apr 14, 2026Updated last month
- Python package for machine learning for healthcare using a OMOP common data model☆110Jun 17, 2023Updated 2 years ago
- Package to estimate the grouping loss of a classifier, based on the paper "Beyond calibration: estimating the grouping loss of modern neu…☆11Apr 24, 2026Updated last month
- Simulations for predictive model selection in causal inference☆13Jan 16, 2025Updated last year
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 8 months ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- ropensci registry☆13May 6, 2026Updated last month
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆16Sep 28, 2020Updated 5 years ago
- Exploratory repository to study predictive survival analysis models☆38May 15, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Table logger using Rich☆13Aug 13, 2025Updated 9 months ago
- PCORnet Ontology to OMOP - beta!☆11Feb 7, 2024Updated 2 years ago
- A modern, lightweight medication sig parser.☆12Jan 21, 2025Updated last year
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Apr 7, 2022Updated 4 years ago
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Jul 17, 2024Updated last year
- A MkDocs plugin to add bootstrap classes to plan markdown generated tables.☆13Mar 27, 2020Updated 6 years ago
- Mapping the MIMIC-III database to the OMOP schema☆146Mar 17, 2024Updated 2 years ago
- This is the implementation of the Recursive Nearest (Neighbor) Agglomeration☆11Oct 9, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- View a list of JSON-serializable dictionaries or a 2-D array, in HandsOnTable, in Jupyter Notebook.☆13Oct 11, 2018Updated 7 years ago
- This repository host code related SNDS database flattening☆16Aug 3, 2022Updated 3 years ago
- ☆20Mar 8, 2023Updated 3 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Jun 25, 2021Updated 4 years ago
- HDR UK Schemas☆12Feb 5, 2024Updated 2 years ago
- A web-based version of the codebook, which generates a concise summary of every variable in a dataset.☆14Apr 9, 2022Updated 4 years ago
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Sep 8, 2017Updated 8 years ago
- Smart grid tables will convert ascii grid tables to proper html grid tables.☆18Dec 23, 2018Updated 7 years ago
- Package contenant des nomenclatures et classifications pour le pmsi☆13Apr 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Medium Article☆11May 15, 2021Updated 5 years ago
- Documentation for the OpenSAFELY platform☆47Updated this week
- Developer project for getting basic API integrations working in under 5 minutes☆11May 22, 2026Updated 2 weeks ago
- Automation code and documentation for standing up the OHDSI toolstack in an AWS environment☆77May 16, 2023Updated 3 years ago
- ⚡️ Pandas dataframes with object oriented programming style (not maintained)☆11Mar 17, 2024Updated 2 years ago
- Ant Design (v5) components for Plotly Dash☆14Feb 16, 2023Updated 3 years ago
- Birgitta is a Python ETL test and schema framework, providing automated tests for pyspark notebooks/recipes.☆15Nov 9, 2023Updated 2 years ago