eds-scikit is a Python library providing tools to process and analyse OMOP data
☆44Dec 19, 2024Updated last year
Alternatives and similar repositories for eds-scikit
Users that are interested in eds-scikit are comparing it to the libraries listed below
Sorting:
- EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-lea…☆62Feb 12, 2025Updated last year
- Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Pyth…☆11Jan 21, 2026Updated last month
- Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.☆158Mar 5, 2026Updated 2 weeks ago
- EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports☆67Feb 5, 2026Updated last month
- PyTorch extension for handling deeply nested sequences of variable length☆13Feb 25, 2026Updated 3 weeks ago
- A web application to find patients, build cohorts and visualize health records☆55Updated this week
- InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databa…☆15Mar 6, 2025Updated last year
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 2 years ago
- Package to estimate the grouping loss of a classifier, based on the paper "Beyond calibration: estimating the grouping loss of modern neu…☆11Dec 14, 2024Updated last year
- Simulations for predictive model selection in causal inference☆13Jan 16, 2025Updated last year
- Health Data Metrics (HDM) a Data Quality assessment Application.☆12Jan 15, 2023Updated 3 years ago
- Hephaestus - ETL and ML tools for OHDSI - OMOP CDM☆13Sep 18, 2025Updated 6 months ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Jan 17, 2022Updated 4 years ago
- ropensci registry☆13Updated this week
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆15Sep 28, 2020Updated 5 years ago
- Exploratory repository to study predictive survival analysis models☆37May 15, 2023Updated 2 years ago
- PCORnet Ontology to OMOP - beta!☆11Feb 7, 2024Updated 2 years ago
- A modern, lightweight medication sig parser.☆12Jan 21, 2025Updated last year
- Text matching UK Biobank Self-Reported medication descriptions for medication classification☆27Apr 7, 2022Updated 3 years ago
- Sample relational database load scripts and SQL queries for processing SNOMED CT-AU RF2 release files.☆18Jul 17, 2024Updated last year
- A MkDocs plugin to add bootstrap classes to plan markdown generated tables.☆13Mar 27, 2020Updated 5 years ago
- Mapping the MIMIC-III database to the OMOP schema☆143Mar 17, 2024Updated 2 years ago
- View a list of JSON-serializable dictionaries or a 2-D array, in HandsOnTable, in Jupyter Notebook.☆13Oct 11, 2018Updated 7 years ago
- This repository host code related SNDS database flattening☆16Aug 3, 2022Updated 3 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆24Jun 25, 2021Updated 4 years ago
- HDR UK Schemas☆12Feb 5, 2024Updated 2 years ago
- Demo of pointblank / projmgr / GitHub Actions / Slack workflow for data quality monitoring☆16Mar 29, 2023Updated 2 years ago
- Extension to Python-Markdown to translate pydantic's model fields to markdown table☆12Apr 19, 2024Updated last year
- Smart grid tables will convert ascii grid tables to proper html grid tables.☆18Dec 23, 2018Updated 7 years ago
- Package contenant des nomenclatures et classifications pour le pmsi☆13Mar 6, 2026Updated 2 weeks ago
- Medium Article☆11May 15, 2021Updated 4 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆39Nov 10, 2023Updated 2 years ago
- Developer project for getting basic API integrations working in under 5 minutes☆11Jan 30, 2026Updated last month
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Mar 5, 2024Updated 2 years ago
- ⚡️ Pandas dataframes with object oriented programming style (not maintained)☆11Mar 17, 2024Updated 2 years ago
- Automation code and documentation for standing up the OHDSI toolstack in an AWS environment☆76May 16, 2023Updated 2 years ago
- Ant Design (v5) components for Plotly Dash☆14Feb 16, 2023Updated 3 years ago
- Birgitta is a Python ETL test and schema framework, providing automated tests for pyspark notebooks/recipes.☆14Nov 9, 2023Updated 2 years ago