Alternatives and similar repositories for eds-scikit:

Users that are interested in eds-scikit are comparing it to the libraries listed below

• aphp / edsnlp
  Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
  ☆120Updated last week
• percevalw / metanno
  Annotator building tool for Jupyter
  ☆21Updated 2 weeks ago
• aphp / eds-pseudo
  EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
  ☆51Updated last month
• aphp / Cohort360-Back-end
  Backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Coh…
  ☆4Updated this week
• aphp / Cohort360-FrontEnd
  A web application to find patients, build cohorts and visualize health records
  ☆45Updated this week
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last month
• curie-data-factory / health-data-metrics
  Health Data Metrics (HDM) a Data Quality assessment Application.
  ☆11Updated 2 years ago
• aphp / foldedtensor
  PyTorch extension for handling deeply nested sequences of variable length
  ☆10Updated 2 months ago
• TeamHeKA / medkit
  This repository is now archived. Further development has been moved to https://github.com/medkit-lib/medkit.
  ☆23Updated last year
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆30Updated 2 years ago
• OHDSI / Radiology-CDM
  Pilot model and converter for integration of radiology data into OMOP-CDM
  ☆22Updated 5 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆107Updated last year
• OHDSI / Perseus
  [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack
  ☆34Updated last year
• jbadger3 / inspectomop
  ☆14Updated last week
• dermatologist / pyomop
  Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
  ☆43Updated this week
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆132Updated 11 months ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆47Updated this week
• UMEssen / FHIR-PYrate
  FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…
  ☆63Updated last month
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆30Updated 11 months ago
• NACHC-CAD / fhir-to-omop
  ☆12Updated 5 months ago
• OHDSI / ClinicalTrialsWGETL
  [under development] ETL materials to support proposal for CDM enhancements for clinical trial data
  ☆23Updated 3 years ago
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆27Updated last week
• fhirpack / fhirpack
  FHIR Python Analysis Client and Kit (FHIRPACK) is a general purpose FHIR client that simplifies the access, analysis and representation o…
  ☆48Updated last year
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• lisavirginia / clinical-abbreviations
  ☆64Updated 4 years ago
• aphp / confit
  Confit is a complete and easy-to-use configuration framework aimed at improving the reproducibility of experiments by relying on the Pyth…
  ☆11Updated 3 weeks ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆124Updated 6 months ago
• RADar-AZDelta / Rabbit-in-a-Blender
  An ETL pipeline to transform your EMP data to OMOP.
  ☆11Updated last month
• OHDSI / Tutorial-ETL
  Course materials for OHDSI ETL tutorial
  ☆45Updated 4 months ago