InspectOmop is a lightweight python 3 package that assists in the extraction of electronic health record(EHR) data from relational databases following the OHDSI OMOP Common Data Model(CDM) standard v>=5.
☆15Mar 6, 2025Updated last year
Alternatives and similar repositories for InspectOMOP
Users that are interested in InspectOMOP are comparing it to the libraries listed below
Sorting:
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29May 28, 2021Updated 4 years ago
- ☆14Mar 6, 2025Updated last year
- eds-scikit is a Python library providing tools to process and analyse OMOP data☆44Dec 19, 2024Updated last year
- EndoL2H: Deep Super-Resolution for Capsule Endoscopy☆22Jun 20, 2020Updated 5 years ago
- Code for 'Teaching with Interactive Data Visualization' site☆23May 6, 2015Updated 10 years ago
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.☆57Feb 26, 2026Updated last week
- Deep learning model for sepsis prediction using high-frequency data☆18May 5, 2019Updated 6 years ago
- Medical Similarity Dataset creation from SNOMED☆28Jul 14, 2022Updated 3 years ago
- Repository for development of the genomic module of the CDM.☆25Jun 14, 2019Updated 6 years ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 2 years ago
- Repository with information about the BioHackathon hosted in Paris in Nov 2018☆28Jul 6, 2021Updated 4 years ago
- R package to easily interface with OMOP-formatted EHR data.☆37Mar 4, 2020Updated 6 years ago
- ETL Tool for converting datasets to OMOP CDM☆36Nov 24, 2022Updated 3 years ago
- This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.☆33Jun 6, 2025Updated 9 months ago
- ☆10Jan 27, 2022Updated 4 years ago
- Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using …☆33Feb 19, 2026Updated 2 weeks ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- Programmatically interact with Tamr☆11Jul 25, 2023Updated 2 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- ☆15Jul 10, 2025Updated 7 months ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Oct 3, 2023Updated 2 years ago
- GitHub Action to add reviewer(s) to a pull request.☆12Apr 23, 2024Updated last year
- Introducción a la ciencia de datos y al aprendizaje automático☆10Nov 2, 2017Updated 8 years ago
- Non Intrusive Load Monitoring data repository and data converter for NILMTK☆11Feb 10, 2017Updated 9 years ago
- A web application for synchronising and backing up Google Photos accounts and media, implemented as a django package☆13Apr 24, 2024Updated last year
- Source files for the ireland-energy-wiki website which contains an actively maintained collection of Irish energy-related modelling resou…☆10Nov 15, 2021Updated 4 years ago
- Training materials for the intro and advanced R course☆11Oct 31, 2017Updated 8 years ago
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated last year
- Backend for Dumpstermap.org, a collaborative world wide map to share dumpster locations for others to find.☆11Updated this week
- Data notification service: subscribe to keywords and get notified whenever an open data sources mentions that keyword.☆24Aug 25, 2013Updated 12 years ago
- DOMIAS, a density-based MIA model that aims to infer membership by targeting local overfitting of the generative model.☆12May 29, 2023Updated 2 years ago
- The current forest surveillance systems methods consume a lot of resources and are less efficient, not reliable and require a constant hu…☆15Jun 1, 2020Updated 5 years ago
- El Blockchain Community Lab (BCL) es un punto de encuentro para cualquier persona interesada en la tecnología blockchain, sus aplicacione…☆15Sep 17, 2019Updated 6 years ago
- Interactive visualizations of legislative cosponsorship networks.☆10Jan 6, 2016Updated 10 years ago
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Jul 24, 2025Updated 7 months ago
- This project aims to study the Image Colorization problem and implement a Convolutional Neural Network that is able to colorize black and…☆11Feb 25, 2021Updated 5 years ago
- Notebooks for the tutorial of the PyCon.DE 2023 Conference☆14Apr 18, 2023Updated 2 years ago
- This repo is a part of the analysis made on the Star Wars data set to extract few interesting patterns.☆10Mar 12, 2019Updated 6 years ago