This repo contains a JupyterLab notebook allowing individual SNPs to be filtered from the UKB genotyping data. A few approaches to filtering are provided, including options to filter by individual SNP rsIDs or by genomic regions of interest.
☆21Jul 18, 2025Updated 7 months ago
Alternatives and similar repositories for SNP-filtering
Users that are interested in SNP-filtering are comparing it to the libraries listed below
Sorting:
- Converting UK Biobank genome-wide genotyping data from one reference build to another☆23Jun 20, 2024Updated last year
- UKB RAP Notebooks Genomics contains a collection of examples of how to use UK Biobank Genomics data on the Research Analysis Platform (RA…☆33Sep 20, 2024Updated last year
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆154Feb 19, 2026Updated 2 weeks ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆12Oct 29, 2025Updated 4 months ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago
- ☆21May 6, 2025Updated 10 months ago
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆39Dec 27, 2022Updated 3 years ago
- ☆11Feb 2, 2026Updated last month
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆10May 31, 2022Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Mar 13, 2025Updated 11 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆12Nov 12, 2025Updated 3 months ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆11Oct 31, 2024Updated last year
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 8 months ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- ☆10Mar 29, 2025Updated 11 months ago
- Map large-scale single cells to the exact spatial locations☆16Jun 12, 2025Updated 8 months ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 2 years ago
- Explore the Hi-Cs☆11Nov 30, 2025Updated 3 months ago
- ☆10Dec 16, 2024Updated last year
- ☆11May 10, 2025Updated 9 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- ☆14Oct 24, 2025Updated 4 months ago
- ☆10Sep 4, 2024Updated last year
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- A shiny app for metacell analysis☆10Feb 26, 2026Updated last week
- ☆11Feb 16, 2021Updated 5 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Intelligent virtual patient research based on medical knowledge graph 虚拟病人、医学知识图谱☆12Aug 16, 2019Updated 6 years ago