SwissTPH / openmalariaLinks
A simulator of malaria epidemiology and control
☆82Updated 3 weeks ago
Alternatives and similar repositories for openmalaria
Users that are interested in openmalaria are comparing it to the libraries listed below
Sorting:
- R package for deriving social mixing matrices from survey data.☆41Updated 3 weeks ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆99Updated 4 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- Inferring high-resolution human mixing patterns for disease modeling☆47Updated 2 years ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- European Covid-19 Forecast Hub.☆48Updated 11 months ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago
- COVID-19 Scenario Modeling Hub☆67Updated 5 months ago
- R package for "Epidemics: Models and data using R"☆55Updated 3 years ago
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆122Updated 2 years ago
- epidemia package☆48Updated 3 years ago
- Points of Significance: Modeling infectious epidemics☆11Updated 11 months ago
- A framework for data-driven stochastic disease spread simulations☆36Updated this week
- Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…☆71Updated 2 years ago
- Updates to the synthetic contact matrices☆38Updated 2 years ago
- Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitat…☆105Updated last year
- Source files for building the IDM EMOD disease transmission model.☆103Updated this week
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 4 years ago
- ☆40Updated last year
- Utility functions for the COVID-19 forecast hub☆18Updated last year
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆62Updated this week
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 3 years ago
- Interactive plotting for mathematical models of infectious disease spread☆14Updated last year
- Text project for theoretical primer on human evolutionary ecology☆35Updated 2 years ago
- outbreaks: an R package compiling disease outbreak data☆52Updated 2 years ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Updated 3 years ago