SwissTPH / openmalariaLinks
A simulator of malaria epidemiology and control
☆80Updated this week
Alternatives and similar repositories for openmalaria
Users that are interested in openmalaria are comparing it to the libraries listed below
Sorting:
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 3 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆130Updated 2 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Updated 3 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆35Updated this week
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆48Updated this week
- epidemia package☆48Updated 3 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 3 months ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- ☆41Updated 2 weeks ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- R Package for individual based epidemiological models☆30Updated 9 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated 11 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- An R interface to open-access malaria data, hosted by the Malaria Atlas Project.☆45Updated 2 weeks ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆97Updated 2 weeks ago
- Resources for Influenza Research☆23Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆46Updated last month
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- The repository for the English version of the Epidemiologist R Handbook☆120Updated 5 months ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆24Updated 6 months ago
- Repository for the R for Epidemiology book☆25Updated this week
- ☆40Updated 11 months ago
- A framework for data-driven stochastic disease spread simulations☆35Updated last month
- CRAN Task View: Epidemiology☆22Updated last week