SwissTPH / openmalaria
A simulator of malaria epidemiology and control
☆78Updated last week
Alternatives and similar repositories for openmalaria:
Users that are interested in openmalaria are comparing it to the libraries listed below
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated last month
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated last year
- Updates to the synthetic contact matrices☆36Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆119Updated this week
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated 6 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆95Updated 5 months ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 2 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆59Updated this week
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆53Updated 3 months ago
- Inference framework for serological data☆16Updated last month
- Source files for building the IDM EMOD disease transmission model.☆97Updated 2 weeks ago
- R package for statistical inference using partially observed Markov processes☆115Updated 2 weeks ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- R Package for individual based epidemiological models☆30Updated 4 months ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆46Updated last month
- FluSight Forecast Submissions☆18Updated 9 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- SEIR transmission model of COVID-19. Documentation at:☆51Updated 11 months ago
- Mathematical Modeling of Infectious Disease Dynamics☆249Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 8 months ago
- COVID-19 Scenario Modeling Hub☆64Updated 2 weeks ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated last month
- ☆39Updated this week
- The Public FRED Repository☆75Updated 8 months ago
- Model information for https://www.cdc.gov/coronavirus/2019-ncov/covid-data/forecasting-us.html☆27Updated last year