Simulation-based Inference for Epidemiological Dynamics
☆26Sep 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for sbied
Users that are interested in sbied are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆10Sep 10, 2024Updated 2 years ago
- Pathogen evolution, selection and immunity☆47Mar 5, 2024Updated 2 years ago
- A Tutorial Introduction to R☆16Sep 6, 2023Updated 3 years ago
- R package for statistical inference using partially observed Markov processes☆122Updated this week
- Fit stochastic differential equation models with time-varying parameters☆15Jul 30, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Aug 11, 2022Updated 4 years ago
- Inference for State Space Models like playing with duplo blocks☆25May 9, 2017Updated 9 years ago
- Subplex Optimization Algorithm☆11Mar 23, 2026Updated 6 months ago
- Course materials for Stats 531 Winter 2016 (Analysis of Time Series)☆13Feb 6, 2020Updated 6 years ago
- An R package for integrating differential equations in C++☆19May 25, 2024Updated 2 years ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- ☆15Nov 2, 2020Updated 5 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Discrete-Event Simulation in R☆11Sep 14, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis of global migration patterns of seasonal influenza viruses☆23Jul 24, 2019Updated 7 years ago
- Javascript implementation of an epidemic SIR model☆20Sep 24, 2025Updated 11 months ago
- A Heroku service that lets you send anonymous messages to colleagues on Slack.☆20Jun 19, 2020Updated 6 years ago
- Introduction to Econometrics at the University of Oregon (EC421) during Spring quarter, 2020. Taught by Ed Rubin☆14Jan 27, 2022Updated 4 years ago
- ☆13Nov 28, 2023Updated 2 years ago
- Stata kernel for IPython/Jupyter☆12Jun 10, 2018Updated 8 years ago
- Compile Stan models to WebAssembly.☆15May 14, 2023Updated 3 years ago
- R package for "Epidemics: Models and data using R"☆55Jun 12, 2022Updated 4 years ago
- A 2-week introduction to R programming course, with a focus on public health datasets☆16Jun 18, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Source code for http://freerangestats.info☆19Updated this week
- Build and check R packages using Travis or other CIs☆55Jun 12, 2020Updated 6 years ago
- A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, a…☆19Sep 1, 2026Updated 3 weeks ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆12Dec 21, 2024Updated last year
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆15Nov 2, 2024Updated last year
- Introduction to Econometrics at the University of Oregon (EC421) during Winter quarter, 2022. Taught by Ed Rubin.☆13Mar 5, 2022Updated 4 years ago
- Historical CDC Vaccination Data (from https://covid.cdc.gov/covid-data-tracker/#vaccinations)☆23Jan 26, 2023Updated 3 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Scripts for estimating and visualizing epidemiological modeling of an epidemic (developed for COVID-19)☆13May 28, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆27Updated this week
- ☆15Oct 7, 2019Updated 6 years ago
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Jul 13, 2021Updated 5 years ago
- COVID-19 Scenario Modeling Hub☆67May 6, 2025Updated last year
- A framework for data-driven stochastic disease spread simulations☆39Sep 13, 2026Updated last week