Alternatives and similar repositories for covid-uk

Users that are interested in covid-uk are comparing it to the libraries listed below

• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆55Updated 3 years ago
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• adamkucharski / 2020-ncov
  Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…
  ☆71Updated 2 years ago
• rs-delve / covid19_datasets
  Interfacing several COVID-19 related datasets
  ☆45Updated 3 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 2 years ago
• epiforecasts / covid
  Temporal variation in transmission during the COVID-19 outbreak
  ☆109Updated 2 weeks ago
• cmmid / ringbp
  ☆53Updated last year
• cmmid / covid-age
  Analysis code and data for COVID-19 age-specific clinical fraction
  ☆24Updated 5 years ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆42Updated this week
• OxfordDemSci / ex2020
  Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'
  ☆17Updated 4 years ago
• jriou / covid_adjusted_cfr
  ☆89Updated 5 years ago
• cdcepi / FluSight-forecasts
  FluSight Forecast Submissions
  ☆19Updated last year
• mrc-ide / COVID19_CFR_submission
  Repository for all scripts required to replicate the CFR analysis for paper submission.
  ☆71Updated 5 years ago
• bob-carpenter / case-studies
  Case studies in applied and computational statistics.
  ☆39Updated 7 months ago
• rmcelreath / rethinking_manual
  Extended documentation and model examples for rethinking R package
  ☆33Updated 8 years ago
• covidestim / covidestim
  Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
  ☆27Updated 3 months ago
• epirecipes / epicookbook
  A cookbook of epidemiological models
  ☆13Updated 6 years ago
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆49Updated last year
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆28Updated 4 years ago
• reconverse / outbreaks
  outbreaks: an R package compiling disease outbreak data
  ☆52Updated 3 years ago
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 5 years ago
• ukhsa-collaboration / pygom
  ODE modelling in Python
  ☆30Updated 4 months ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated last year
• rmcelreath / elements_evolutionary_anthropology
  Text project for theoretical primer on human evolutionary ecology
  ☆35Updated 3 years ago
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆132Updated this week
• epidemics / COVIDNPIs
  Data and code for COVID-19 NPI effectiveness estimation.
  ☆30Updated 4 years ago
• jgabry / bayes-vis-paper
  'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
  ☆67Updated 5 years ago
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆39Updated 2 years ago
• wpgp / BEARmod
  Basic Epidemic, Activity, and Response COVID-19 model
  ☆31Updated 5 years ago