cdcepi / FluSight-forecast-hubLinks
☆41Updated last week
Alternatives and similar repositories for FluSight-forecast-hub
Users that are interested in FluSight-forecast-hub are comparing it to the libraries listed below
Sorting:
- ☆40Updated 10 months ago
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆48Updated this week
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Flu Scenario Modeling Hub☆12Updated last month
- ☆41Updated 3 weeks ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 5 months ago
- R package for real-time Rt estimation with penalized splines☆14Updated this week
- Updates to the synthetic contact matrices☆36Updated last year
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆36Updated this week
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 2 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 3 years ago
- Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting☆11Updated 2 months ago
- ☆11Updated 2 weeks ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 weeks ago
- ☆29Updated 2 months ago
- Utilities for Scoring and Assessing Predictions☆53Updated 3 weeks ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- The Flexible Epidemic Modeling Pipeline☆9Updated last week
- Course on nowcasting and forecasting of infectious disease dynamcis☆17Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago