SilvioWeging / kASA
kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
☆23Updated last year
Alternatives and similar repositories for kASA:
Users that are interested in kASA are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Highly sensitive pathogen detection☆11Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆34Updated 2 months ago
- De novo VIral Genome Annotator☆21Updated 4 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Find Unique genomic Regions☆29Updated last week
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated 8 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- ☆13Updated 6 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 months ago
- ☆29Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- finding conserved regions in highly diverse genomes☆16Updated 5 months ago
- strain-level analysis tools☆33Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆18Updated 3 years ago