Alternatives and similar repositories for prodigy-lig

Users that are interested in prodigy-lig are comparing it to the libraries listed below

• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year
• CBIIT / KDS
  KDS software for Kinase Drug Selectivity
  ☆11Updated 2 years ago
• sagagugit / ProBASS
  ☆12Updated 8 months ago
• strauchlab / scaffold_design
  ☆18Updated last year
• Faezov / PDBrenum
  ☆30Updated 3 months ago
• MahaThafar / DTi2Vec
  This repository provides an implementation of the DTi2Vec tool, to identify Drug-Target interaction using network embedding and ensemble …
  ☆12Updated 3 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• raghavagps / toxinpred3
  An improved method for predicting toxicity of the peptides and designing of non-toxic peptides
  ☆15Updated 3 months ago
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 11 months ago
• michal-brylinski / efindsite
  Ligand binding site prediction and virtual screening
  ☆12Updated 6 years ago
• aggelos-michael-papadopoulos / ParaSurf
  [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…
  ☆24Updated 3 weeks ago
• gdocking / gdock
  Protein-Protein Docking using Genetic Algorithm
  ☆17Updated last year
• AspirinCode / iPPIGAN
  De novo molecular design with deep molecular generative models for protein-protein interaction(PPI) inhibitors
  ☆20Updated 9 months ago
• ahaldane / Mi3-GPU
  ☆18Updated 6 months ago
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• LBLQMM / MACAW
  ☆14Updated 3 years ago
• sjdv1982 / attract
  ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)
  ☆18Updated last month
• azamanos / HydraProt
  ☆20Updated 3 months ago
• Cardypro / StructureAnalyzer
  A program analyzing 3D protein structures from PDB to generate 2D binding motifs
  ☆15Updated 4 years ago
• iwatobipen / vs_vina
  ☆13Updated 3 years ago
• ratthachat / awesome-biochem-ai
  Curated list on Deep Transformers Applications on Biology and Chemistry
  ☆18Updated 2 years ago
• LBM-EPFL / CLoNe
  Clustering tool for biomolecular structural ensembles and data in general.
  ☆10Updated 5 years ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆15Updated 6 months ago
• scdantu / pycom
  ☆10Updated 3 months ago
• docking-org / pydock3
  Python package wrapping the DOCK Fortran program and providing several tools built on top of it.
  ☆14Updated last month
• 595693085 / ProteinDescriptor
  a protein descriptor for site prediction
  ☆16Updated 6 years ago
• inpacdb / PepVis
  Peptide Virtual Screening Pipeline
  ☆11Updated 6 years ago
• DunbrackLab / ProtCID
  Protein common interface databases
  ☆10Updated 6 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• ur-whitelab / peptide-dashboard
  Web cards/apps describing peptides
  ☆29Updated 2 years ago