emreg00 / repurpose
Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers
☆14Updated 6 years ago
Related projects: ⓘ
- 🪝 What's the latest version for each database?☆26Updated this week
- ☆11Updated 4 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated last month
- Repository for storing code related to the paper by Zdrazil B., Richter L., Brown N., and Guha R. "Moving Targets: Monitoring Target Tren…☆9Updated 3 years ago
- Drug-disease proximity based therapeutic effect screening and analysis☆19Updated 7 years ago
- Network-based Drug Repurposing for Human Coronavirus☆40Updated 4 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆13Updated 11 months ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆9Updated 3 years ago
- Package to analyze Mass Spec Data☆10Updated last year
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Updated 2 years ago
- Project code for BioHackathon Europe 2023.☆16Updated 3 weeks ago
- Network representation learning on drug-target-side effects-indication graphs for side effect prediction☆12Updated 4 years ago
- Target prioritization using network representation learning☆11Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 3 years ago
- Draft cell type definitions from data - candidates for inclusion in CL☆11Updated 2 months ago
- Connect the dots in networks.☆16Updated 4 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆24Updated last year
- ☆9Updated 7 months ago
- Elucidate and visualise a compound's mechanism of action by combining structure-based target prediction with gene expression-based causal…☆12Updated last year
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆17Updated 4 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆27Updated 2 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆17Updated 2 months ago
- Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology☆16Updated 2 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆17Updated 6 years ago
- biochem4j: integrated and extensible biochemical knowledge through graph databases☆12Updated 6 years ago
- A project to capture biological pathway data from academic papers☆28Updated last month
- A stitching platform for InXight☆16Updated last month
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 2 years ago
- Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines o…☆26Updated 3 years ago