Alternatives and similar repositories for treestats

Users that are interested in treestats are comparing it to the libraries listed below

• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last month
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆44Updated 6 years ago
• lamho86 / phylolm
  ☆36Updated 11 months ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆26Updated last week
• fawda123 / ggord
  a take on ordination plots using ggplot2
  ☆65Updated last year
• ropensci / phylotaR
  An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
  ☆25Updated 2 months ago
• ropensci / beautier
  R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
  ☆13Updated last month
• jennahamlin / tinselR
  An Amazing Shiny App
  ☆17Updated 4 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• kpmainali / CooccurrenceAffinity
  Computes affinity between two entities based on their co-occurrence
  ☆27Updated 3 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last month
• dyerlab / gstudio
  An R package for the spatial analysis of population genetic data.
  ☆20Updated 3 months ago
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆30Updated 2 years ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆72Updated 4 months ago
• hhwagner1 / LandGenCourse
  ☆21Updated last year
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 10 months ago
• ropensci / beastier
  R package to run BEAST2
  ☆11Updated last month
• green-striped-gecko / dartR
  Importing and Analysing DArT type snp and silicodart data
  ☆34Updated 6 months ago
• xflouris / libpll-2
  Phylogenetic Likelihood Library 2 - experimental
  ☆11Updated 5 months ago
• heibl / ips
  R Interfaces to Phylogenetic Software
  ☆12Updated 3 weeks ago
• ropensci / phylogram
  Dendrograms for Evolutionary Analysis
  ☆11Updated 5 years ago
• mdkarcher / phylodyn
  ☆19Updated 3 years ago
• gmbecker / genbankr
  ☆21Updated last year
• YuLab-SMU / scatterpie
  scatter pie plot
  ☆65Updated last month
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• KlausVigo / ggnetworx
  phylogenetic networks using ggplot2 and ggtree
  ☆13Updated 9 months ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆16Updated 7 years ago
• grunwaldlab / analysis_of_microbiome_community_data_in_r
  This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…
  ☆16Updated last year