cebel / pyctdLinks
PyCTD is a Python software package to query and analyse data from the CTD database
☆12Updated 3 years ago
Alternatives and similar repositories for pyctd
Users that are interested in pyctd are comparing it to the libraries listed below
Sorting:
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- ☆58Updated 5 years ago
- 🪝 What's the latest version for each database?☆28Updated this week
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Updated 5 years ago
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆43Updated 4 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆25Updated last year
- Method for drug repurposing from knowledge graphs and literature☆36Updated 5 years ago
- ☆20Updated 5 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated 3 weeks ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Updated this week
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆27Updated 3 months ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- SmuDGE: Semantic Disease Gene Embeddings☆12Updated 7 years ago
- Improving Inductive Link Prediction Using Hyper-Relational Facts☆15Updated 3 years ago
- Python package for access to online biomedical resources, usually via REST APIs.☆18Updated 3 weeks ago
- Heterogeneous disease-gene-related☆19Updated 4 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated last month
- The Clinical Trials Knowledge Graph☆64Updated 2 years ago
- ☆16Updated last year
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆12Updated last year
- 📐 Results for the Ranking Metrics submission @ GLB 2022☆11Updated 3 years ago
- Network representation learning on drug-target-side effects-indication graphs for side effect prediction☆13Updated 5 years ago
- ☆16Updated 2 years ago
- Ontology cross-reference and mapping service☆20Updated 2 weeks ago
- ☆57Updated 6 years ago
- ☆130Updated 2 years ago
- A Standard Database for Drug Repositioning☆19Updated 8 years ago
- Drug repurposing for COVID-19 using literature-based discovery☆29Updated 3 years ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Updated last year