PacificBiosciences / SMRT-Analysis

Related projects: ⓘ

• PacificBiosciences / blasr
  ☆119Updated this week
• glennhickey / progressiveCactus
  Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
  ☆80Updated 6 years ago
• PacificBiosciences / cDNA_primer
  ☆58Updated this week
• PacificBiosciences / GenomicConsensus
  ☆94Updated this week
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆81Updated 7 months ago
• PacificBiosciences / FALCON-integrate
  Mostly deprecated. See https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
  ☆31Updated 6 years ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 7 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 3 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆68Updated 8 years ago
• alesssia / YAMP
  YAMP: Yet Another Metagenomic Pipeline
  ☆56Updated last year
• jstjohn / SeqPrep
  Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
  ☆140Updated 7 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆62Updated 6 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆52Updated 8 years ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆101Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆68Updated 2 years ago
• dcjones / fastq-tools
  Small utilities for working with fastq sequence files.
  ☆114Updated last year
• relipmoc / skewer
  ☆95Updated last year
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated last year
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆105Updated 2 months ago
• chiulab / surpi
  SURPI
  ☆82Updated 8 years ago
• i5K-KINBRE-script-share / Irys-scaffolding
  scripts to parse IrysView output
  ☆39Updated 9 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆92Updated 4 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆91Updated 3 years ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆91Updated 5 months ago
• mozack / abra2
  ABRA2
  ☆90Updated last year
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆93Updated 5 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 3 years ago
• statgen / bamUtil
  ☆87Updated 2 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆46Updated 2 weeks ago