OpenBioML / bio-chem-lm
☆30Updated 2 years ago
Alternatives and similar repositories for bio-chem-lm:
Users that are interested in bio-chem-lm are comparing it to the libraries listed below
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- bioinformatics tools running on modal☆86Updated last week
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆89Updated this week
- Benchmark for LLM-based Agents in Computational Biology☆26Updated 2 weeks ago
- ☆99Updated 3 weeks ago
- ☆115Updated 7 months ago
- Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"☆93Updated last year
- ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers☆17Updated 3 months ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 3 months ago
- Minimal AlphaFold☆54Updated 7 months ago
- Directed evolution of proteins in sequence space with gradients☆83Updated 7 months ago
- PDB ProtVista Viewer☆10Updated 6 months ago
- ☆57Updated last year
- Sandbox for Deep-Learning based Computational Protein Design☆109Updated last month
- ML-guided enzyme engineering☆58Updated 3 weeks ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆114Updated last month
- ☆30Updated 4 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆71Updated 2 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆50Updated 7 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆45Updated last month
- A Modular Architecture for Deep Learning Systems☆40Updated this week
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆22Updated 3 weeks ago
- Deep learning for protein science☆33Updated 9 months ago
- Ankh: Optimized Protein Language Model☆220Updated last year
- A standard library for biological research.☆21Updated 3 weeks ago
- Improved antibody structure-based design using inverse folding☆101Updated last week
- ProtMamba: a homology-aware but alignment-free protein state space model☆57Updated 5 months ago
- LLMs for microplate data☆44Updated 5 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆54Updated this week