OpenBioML / bio-chem-lm
☆30Updated 2 years ago
Alternatives and similar repositories for bio-chem-lm:
Users that are interested in bio-chem-lm are comparing it to the libraries listed below
- Benchmark for LLM-based Agents in Computational Biology☆30Updated 3 weeks ago
- Supporting code for the paper "Discovery of a structural class of antibiotics with explainable deep learning"☆94Updated last year
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆96Updated 2 years ago
- ☆115Updated 8 months ago
- ☆99Updated last month
- bioinformatics tools running on modal☆88Updated last month
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 4 months ago
- Directed evolution of proteins in sequence space with gradients☆84Updated 8 months ago
- ☆59Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆92Updated this week
- ML-guided enzyme engineering☆60Updated last month
- Sandbox for Deep-Learning based Computational Protein Design☆110Updated last month
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆115Updated 2 weeks ago
- ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers☆17Updated 4 months ago
- ☆22Updated 2 years ago
- Minimal AlphaFold☆53Updated 7 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 3 years ago
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆19Updated last year
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- Attempt at reproduction of AlphaFold2☆91Updated 5 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆74Updated 3 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆114Updated last month
- ATOMICA: Learning Universal Representations of Intermolecular Interactions☆105Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆127Updated 10 months ago
- Package for processing and analyzing glycans and their role in biology.☆63Updated last week
- Deep learning for protein science☆33Updated 10 months ago
- Mono-repo for protein utilities.☆18Updated 3 years ago
- ☆58Updated 2 weeks ago