jessemzhang / deep_learning_genomics_nlpLinks
Final project for CS224d
☆9Updated 8 years ago
Alternatives and similar repositories for deep_learning_genomics_nlp
Users that are interested in deep_learning_genomics_nlp are comparing it to the libraries listed below
Sorting:
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- A metadata commons to store research software metadata☆41Updated this week
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- Understanding sequence conservation with deep learning☆20Updated 8 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆33Updated 5 years ago
- ☆41Updated 7 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Computational biology utility scripts☆19Updated 3 months ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Processing, quality control and analysis of GAM datsets☆9Updated 2 years ago
- A client for the Ensembl REST API written in the Python programming language☆27Updated last month
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated 9 months ago
- ☆12Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Machine learning tutorial for biologists, designed for Oz Single Cells 2019☆15Updated 5 years ago
- ☆15Updated 5 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 6 months ago
- Tools for munging genomic data☆21Updated 6 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆82Updated 5 months ago