Alternatives and similar repositories for AF3_AbNb_Benchmark

Users that are interested in AF3_AbNb_Benchmark are comparing it to the libraries listed below

• baker-laboratory / CA_RFDiffusion
  ☆73Updated 6 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated 3 weeks ago
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆44Updated this week
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆110Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 6 months ago
• bunzela / AIzymes
  ☆61Updated last month
• Kuhlman-Lab / evopro
  ☆92Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆65Updated 3 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 3 months ago
• yehlincho / BoltzDesign1
  ☆225Updated 3 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆58Updated last year
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆51Updated this week
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆61Updated 9 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆103Updated this week
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆84Updated 2 months ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆67Updated 6 months ago
• huhlim / alphafold-multistate
  ☆41Updated last year
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆86Updated 4 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆89Updated 5 months ago
• kosonocky / bits-to-binders-resources
  Resources for the BioML Challenge 2024: Bits to Binders
  ☆18Updated last year
• sokrypton / af2bind
  ☆52Updated last week
• ELELAB / RosettaDDGPrediction
  ☆83Updated last week
• oxpig / ITsFlexible
  Prediction of Antibody CDR and protein loop flexibility
  ☆17Updated 2 months ago
• wengong-jin / DSMBind
  ☆95Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 8 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆41Updated last year