Alternatives and similar repositories for AF3_AbNb_Benchmark

Users that are interested in AF3_AbNb_Benchmark are comparing it to the libraries listed below

• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆117Updated 2 months ago
• baker-laboratory / CA_RFDiffusion
  ☆71Updated 3 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆99Updated this week
• KhondamirRustamov / FoldCraft
  ☆37Updated 3 weeks ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆36Updated last month
• Kuhlman-Lab / evopro
  ☆87Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• bunzela / AIzymes
  ☆53Updated last month
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆75Updated last month
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆70Updated 3 weeks ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated last week
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆83Updated 2 months ago
• ELELAB / RosettaDDGPrediction
  ☆75Updated 6 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated 2 months ago
• yehlincho / BoltzDesign1
  ☆203Updated 3 weeks ago
• levinthal / Pallatom
  ☆110Updated 3 months ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆118Updated last week
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆59Updated 2 years ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆48Updated last month
• wengong-jin / DSMBind
  ☆92Updated 10 months ago
• sokrypton / af2bind
  ☆49Updated last month
• huhlim / alphafold-multistate
  ☆42Updated last year
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆48Updated 6 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆33Updated 2 years ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆64Updated 3 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆23Updated 5 months ago