Alternatives and similar repositories for uqbio2022

Users that are interested in uqbio2022 are comparing it to the libraries listed below

• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• fayjustin / computational_biology
  course material
  ☆133Updated 2 years ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆103Updated 6 years ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆139Updated 4 months ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆116Updated 3 months ago
• cbg-ethz / SCIPhI
  ☆25Updated 5 years ago
• BIMSBbioinfo / compgen2021
  ☆77Updated 4 years ago
• vanheeringen-lab / seq2science
  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workf…
  ☆165Updated 5 months ago
• mragsac / BISB-Bootcamp-2021
  FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
  ☆19Updated 4 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆104Updated last week
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• s-will / LocARNA
  Alignment of RNAs
  ☆24Updated last year
• sib-swiss / intermediate-python-training
  ☆77Updated last month
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆59Updated last year
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆34Updated 2 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆28Updated this week
• zeyang-shen / maggie
  Bioinformatic approach to identify functional transcription factor binding motifs
  ☆11Updated 3 years ago
• cubimedrub / macworp
  Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.
  ☆20Updated last month
• jdblischak / smk-simple-slurm
  A simple Snakemake profile for Slurm without --cluster-config
  ☆162Updated last year
• cdanielmachado / reframed
  ReFramed: metabolic modeling package
  ☆61Updated last month
• churchmanlab / genewalk
  GeneWalk identifies relevant gene functions for a biological context using network representation learning
  ☆132Updated last year
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 4 months ago
• sebriois / biomart
  Python biomart API
  ☆69Updated 2 years ago
• lakigigar / bioRxiv-diff
  ☆12Updated last year
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆121Updated 3 weeks ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆114Updated this week
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆24Updated last year
• Marsilea-viz / legendkit
  Legend made easy for matplotlib
  ☆32Updated 4 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated this week
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆39Updated 2 years ago