mglerner / IntroToBiophysicsLinks
Introduction to Biophysics, requires one semester of calculus-based Physics.
☆28Updated 2 years ago
Alternatives and similar repositories for IntroToBiophysics
Users that are interested in IntroToBiophysics are comparing it to the libraries listed below
Sorting:
- Understand the Gillespie algorithm and build it yourself in Python☆24Updated 7 years ago
- Modeling toolkit for biochemical simulation☆81Updated 11 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Hacking structural biology with Python and pandas☆21Updated 10 years ago
- Python Environment for Modeling and Simulating Biological Systems☆130Updated 3 weeks ago
- The official PySCeS project source code repository.☆39Updated last week
- Rule-based modeling framework☆65Updated 6 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆121Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 3 weeks ago
- CompuCell3D public source code repository☆78Updated 2 weeks ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- Jupyter Notebooks of Leonard Susskind's Statistical Mechanics lectures☆17Updated 7 years ago
- Codes and tutorials on thermodynamics and statistical physics☆16Updated 2 years ago
- Increasingly complete example bioinformatics workflow☆18Updated 3 years ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- HPC Python lesson materials☆61Updated 2 years ago
- Exercises and notes for N.G. Van Kampen's Stochastic Processes in Physics and Chemistry☆39Updated 6 months ago
- ☆31Updated 4 years ago
- A python package for producing publication quality images using matplotlib.☆104Updated 5 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Updated 7 years ago
- localCIDER - sequence analysis tool for disordered protein sequences☆25Updated 2 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆101Updated 3 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated last month
- Python framework for multi-parameter optimization and evaluation of protein folding models☆17Updated 4 years ago
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Updated 5 years ago
- Gillespie Stochastic Simulation Algorithm☆14Updated 12 years ago
- Python framework for Systems Biology modeling☆190Updated 5 months ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 8 months ago