Alternatives and similar repositories for IntroToBiophysics

Users that are interested in IntroToBiophysics are comparing it to the libraries listed below

• karinsasaki / gillespie-algorithm-python
  Understand the Gillespie algorithm and build it yourself in Python
  ☆24Updated 7 years ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆81Updated 10 months ago
• cing / HackingStructBiolTalk
  Hacking structural biology with Python and pandas
  ☆21Updated 10 years ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆39Updated this week
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆119Updated last week
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 weeks ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• encore-similarity / encore
  An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…
  ☆16Updated 7 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated last month
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆130Updated 2 weeks ago
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆78Updated last week
• quantumjot / PyFolding
  Python framework for multi-parameter optimization and evaluation of protein folding models
  ☆17Updated 4 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 6 months ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆25Updated 2 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆55Updated last week
• croningp / Paper-AssemblyTreeOfLife
  Code associated with the paper "Exploring and Mapping Chemical Space with Molecular Assembly Trees"
  ☆22Updated 4 years ago
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆33Updated 6 months ago
• channotation / chap
  CHAP is a tool for the functional annotation of ion channel structures:
  ☆21Updated last year
• acorg / slurm-pipeline
  A Python class for scheduling SLURM jobs
  ☆60Updated last year
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• philipwfowler / simple-membrane-protein-analysis
  This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.
  ☆28Updated 5 years ago
• PDBeurope / PDBe_Programming
  PDBe Programming Interfaces information
  ☆14Updated 7 years ago
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆29Updated 8 months ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆37Updated 2 years ago
• johnbarton / ACE
  Fast and flexible code for solving the inverse Ising/Potts inference problem
  ☆27Updated 2 years ago
• sbl-sdsc / mmtf-workshop-2018
  Structural Bioinformatics Training Workshop & Hackathon 2018
  ☆60Updated 3 years ago
• jchodera / statmech-for-biochemists
  A primer on statistical mechanics for biochemists
  ☆48Updated 3 years ago