mingyi-wang / somatic-combinerLinks
β10Updated 4 years ago
Alternatives and similar repositories for somatic-combiner
Users that are interested in somatic-combiner are comparing it to the libraries listed below
Sorting:
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq dataβ27Updated last year
- πΊ Exploring novel tumor epitope identificationβ34Updated 4 years ago
- β48Updated 2 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinityβ17Updated 8 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.β59Updated 6 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embeddedβ24Updated 3 years ago
- Detect somatic variants from tumor and normal WGS/WXS dataβ18Updated last month
- A continually expanding collection of RNA-seq toolsβ50Updated 8 months ago
- Epimap processing and analysis code repositoryβ33Updated 2 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing dataβ36Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networksβ28Updated 2 months ago
- β15Updated 2 years ago
- Β a Customized Proteogenomic Workflow for Neoantigen Prediction and Selectionβ24Updated 3 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencingβ25Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessmentβ28Updated last year
- β39Updated 9 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysisβ22Updated 8 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.β50Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.β19Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq dataβ30Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seqβ17Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumoursβ29Updated 3 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) dataβ28Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screeningβ24Updated 10 months ago
- Interactive multiscale visualization for structural variation in human genomesβ70Updated this week
- RNA editing quantification in deep transcriptome dataβ15Updated 2 years ago
- Benchmarking long-read RNA-seq analysis toolsβ27Updated 4 months ago
- Comparison of Adaptive Immune Receptor Repertoiresβ27Updated 4 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated fromβ¦β30Updated 3 weeks ago
- Single cell Nanopore sequencing data for Genotype and Phenotypeβ54Updated last month