ICGC-TCGA-PanCancer / dkfz_dockered_workflows
This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow
☆9Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for dkfz_dockered_workflows
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆46Updated 5 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated last month
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆55Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 7 years ago
- Predict mutated T-cell epitopes from sequencing data☆27Updated 6 years ago
- Important papers relating to the biology of cell free DNA☆18Updated 6 years ago
- ☆43Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Universal RObust Peak Annotator☆15Updated 11 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- ☆10Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated 11 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆63Updated 5 months ago
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆11Updated last year
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- Framework for Metastatic And Clonal History INtegrative Analysis☆34Updated 3 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago