ICGC-TCGA-PanCancer / dkfz_dockered_workflowsLinks
This is the container that houses the Roddy-based component provided by DKFZ for the DEWrapper workflow
☆9Updated 6 years ago
Alternatives and similar repositories for dkfz_dockered_workflows
Users that are interested in dkfz_dockered_workflows are comparing it to the libraries listed below
Sorting:
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated 2 years ago
- Universal RObust Peak Annotator☆16Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 2 months ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆28Updated 4 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Updated 7 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- ☆44Updated 6 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Predict mutated T-cell epitopes from sequencing data☆30Updated 4 months ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆29Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- Exploratory data analysis for pooled CRISPR/Cas9 screens☆21Updated 8 years ago
- This BLENDER has been sunsetted☆16Updated 9 months ago