Alternatives and similar repositories for BioNLP-2016:

Users that are interested in BioNLP-2016 are comparing it to the libraries listed below

• CrowdTruth / Medical-Relation-Extraction
  Crowdsourced ground truth for medical relation extraction.
  ☆69Updated 5 years ago
• jbjorne / TEES
  Turku Event Extraction System
  ☆146Updated 5 years ago
• noc-lab / clinical_concept_extraction
  Clinical Concept Extraction with Contextual Word Embedding
  ☆40Updated 4 years ago
• cambridgeltl / MTL-Bioinformatics-2016
  ☆224Updated 7 years ago
• yuzhimanhua / LM-LSTM-CRF
  ☆48Updated last year
• datquocnguyen / BioPosDep
  Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)
  ☆33Updated 5 years ago
• MeRajat / SolvingAlmostAnythingWithBert
  BioBert Pytorch
  ☆116Updated 2 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆170Updated 4 years ago
• BaderLab / Transfer-Learning-BNER-Bioinformatics-2018
  This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…
  ☆37Updated 5 years ago
• ncbi-nlp / Ab3P
  Abbreviation definition dection library trained on PubMed abstracts
  ☆45Updated 4 years ago
• raghavchalapathy / Bidirectional-LSTM-CRF-for-Clinical-Concept-Extraction
  Bidirectional LSTM-CRF for Clinical Concept Extraction using i2b2-2010 data
  ☆88Updated 8 years ago
• yuzhimanhua / Multi-BioNER
  Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
  ☆134Updated 6 months ago
• spyysalo / standoff2conll
  Conversion from brat-flavored standoff to CoNLL format
  ☆51Updated 4 years ago
• abachaa / MEDIQA2019
  Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019
  ☆51Updated 2 years ago
• hu-ner / huner
  Named Entity Recognition for biomedical entities
  ☆47Updated 2 years ago
• stylerw / thymedata
  This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…
  ☆37Updated 9 years ago
• bepnye / EBM-NLP
  ☆91Updated 5 years ago
• BaderLab / Biomedical-Corpora
  A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…
  ☆36Updated 6 years ago
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆290Updated 3 years ago
• clips / clicr
  Machine reading comprehension on clinical case reports
  ☆148Updated 5 years ago
• UCDenver-ccp / CRAFT
  ☆71Updated last year
• wonjininfo / CollaboNet
  CollaboNet for Biomedical Named Entity Recognition
  ☆48Updated 6 years ago
• patverga / bran
  Full abstract relation extraction from biological texts with bi-affine relation attention networks
  ☆129Updated 6 years ago
• Rostlab / nalaf
  NLP framework in python for entity recognition and relationship extraction
  ☆111Updated 2 years ago
• gabrielStanovsky / supervised-oie
  Code for training a Neural Open IE model (NAACL2018)
  ☆121Updated 2 years ago
• dongfang91 / Generate-and-Rank-ConNorm
  Generate-and-Rank Framework with Semantic Type Regularization for Biomedical Concept Normalization
  ☆25Updated 3 years ago
• svjan5 / medtype
  MedType: Improving Medical Entity Linking with Semantic Type Prediction
  ☆116Updated 2 years ago
• geetickachauhan / relation-extraction
  Relation Extraction with Semeval 2010 data, i2b2 2010 VA challenge classification data and DDI extraction data.
  ☆19Updated 5 years ago
• UKPLab / emnlp2017-relation-extraction
  Context-Aware Representations for Knowledge Base Relation Extraction
  ☆289Updated 2 years ago
• DFKI-NLP / TRE
  [AKBC 19] Improving Relation Extraction by Pre-trained Language Representations
  ☆108Updated 3 years ago