Alternatives and similar repositories for BioNLP-2016:

Users that are interested in BioNLP-2016 are comparing it to the libraries listed below

• yuzhimanhua / Multi-BioNER
  Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
  ☆134Updated 7 months ago
• yuzhimanhua / LM-LSTM-CRF
  ☆48Updated last year
• cambridgeltl / MTL-Bioinformatics-2016
  ☆224Updated 7 years ago
• CrowdTruth / Medical-Relation-Extraction
  Crowdsourced ground truth for medical relation extraction.
  ☆69Updated 6 years ago
• MeRajat / SolvingAlmostAnythingWithBert
  BioBert Pytorch
  ☆116Updated 2 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆170Updated 4 years ago
• bepnye / EBM-NLP
  ☆90Updated 5 years ago
• jbjorne / TEES
  Turku Event Extraction System
  ☆146Updated 6 years ago
• noc-lab / clinical_concept_extraction
  Clinical Concept Extraction with Contextual Word Embedding
  ☆40Updated 4 years ago
• datquocnguyen / BioPosDep
  Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)
  ☆33Updated 5 years ago
• BaderLab / Transfer-Learning-BNER-Bioinformatics-2018
  This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…
  ☆37Updated 6 years ago
• spyysalo / standoff2conll
  Conversion from brat-flavored standoff to CoNLL format
  ☆51Updated 4 years ago
• abachaa / MEDIQA2019
  Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019
  ☆51Updated 2 years ago
• hu-ner / huner
  Named Entity Recognition for biomedical entities
  ☆47Updated 2 years ago
• BaderLab / Biomedical-Corpora
  A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…
  ☆36Updated 6 years ago
• svjan5 / medtype
  MedType: Improving Medical Entity Linking with Semantic Type Prediction
  ☆116Updated 2 years ago
• clips / clicr
  Machine reading comprehension on clinical case reports
  ☆148Updated 5 years ago
• BaderLab / saber
  Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …
  ☆102Updated 4 years ago
• ncbi-nlp / Ab3P
  Abbreviation definition dection library trained on PubMed abstracts
  ☆47Updated 4 years ago
• davidsbatista / BREDS
  "Bootstrapping Relationship Extractors with Distributional Semantics" (Batista et al., 2015) in EMNLP'15 - Python implementation
  ☆142Updated 6 months ago
• DFKI-NLP / TRE
  [AKBC 19] Improving Relation Extraction by Pre-trained Language Representations
  ☆108Updated 3 years ago
• raghavchalapathy / Bidirectional-LSTM-CRF-for-Clinical-Concept-Extraction
  Bidirectional LSTM-CRF for Clinical Concept Extraction using i2b2-2010 data
  ☆88Updated 8 years ago
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆40Updated 5 years ago
• jennydsuza9 / disorder-normalizer
  A system for normalizing disorder mentions in biomedical data.
  ☆19Updated 9 years ago
• Rostlab / nalaf
  NLP framework in python for entity recognition and relationship extraction
  ☆114Updated 2 years ago
• jgc128 / mednli
  MedNLI - A Natural Language Inference Dataset For The Clinical Domain
  ☆127Updated 2 years ago
• shreyashub / BioFLAIR
  BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks
  ☆41Updated 4 years ago
• LiyuanLucasLiu / ReHession
  Heterogeneous Supervision for Relation Extraction: A Representation Learning Approach
  ☆83Updated 6 years ago
• Andy-jqa / bioelmo
  BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.
  ☆33Updated 5 years ago
• wglassly / cnnormaliztion
  For icibm paper
  ☆11Updated 8 years ago