A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.
☆24Jul 31, 2018Updated 7 years ago
Alternatives and similar repositories for D3NER
Users that are interested in D3NER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Mar 5, 2019Updated 7 years ago
- ☆11Aug 14, 2020Updated 5 years ago
- ☆48Aug 30, 2023Updated 2 years ago
- For icibm paper☆11Feb 23, 2017Updated 9 years ago
- ☆11Nov 19, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 5 years ago
- Bi-LSTM - CRF Named Entity Recognition model for Korean (Keras)☆16Feb 7, 2018Updated 8 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42May 31, 2020Updated 5 years ago
- Att-ChemdNER☆111Jul 17, 2018Updated 7 years ago
- ☆15Jun 9, 2018Updated 7 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- ☆39Nov 16, 2020Updated 5 years ago
- BERT semantic search engine for searching literature research papers for coronavirus covid-19 in google colab☆31Apr 13, 2020Updated 6 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Jul 25, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Oct 20, 2022Updated 3 years ago
- GC4LM: A Colossal (Biased) language model for German☆13May 2, 2021Updated 5 years ago
- ☆234Aug 15, 2017Updated 8 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- ☆20Feb 20, 2025Updated last year
- emr annoatation tool☆19Oct 23, 2016Updated 9 years ago
- LSTM-CRF for NER with ConLL-2002 dataset☆47Jun 11, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generate SQL from Graphic Walker visualization DSL☆13Feb 23, 2024Updated 2 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Mar 26, 2026Updated last month
- Analysis code for knowledge discovery project☆12Sep 25, 2018Updated 7 years ago
- ☆11Feb 3, 2025Updated last year
- Using Huggingface to generate relation expressions☆15Jan 15, 2021Updated 5 years ago
- A framework for keeping biomedical text mining result up-to-date☆42Jul 11, 2020Updated 5 years ago
- Data and code for paper "ODSum: New Benchmarks for Open Domain Multi-Document Summarization"☆11Sep 20, 2024Updated last year
- ☆123May 2, 2018Updated 8 years ago
- neural joint model for entity and relation extraction☆26Apr 8, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A small python package that allows the user to look up common medical abbreviations.☆13Apr 19, 2022Updated 4 years ago
- A multi-label classification plugin for AllenNLP.☆11Jan 13, 2023Updated 3 years ago
- The depository support training and testing BERT-CNN model on three medical relation extraction corpora: BioCreative V CDR task corpus, t…☆74Jun 9, 2019Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguation☆52Mar 30, 2026Updated last month
- Pytorch implementation of the RaSoR paper "Learning Recurrent Span Representations for Extractive Question Answering" (Lee et al. 2016) a…☆15May 8, 2017Updated 9 years ago
- ☆43Feb 3, 2019Updated 7 years ago
- This repository contains details and key points of research papers related to NLP and Deep Learning☆11Oct 25, 2023Updated 2 years ago