GuangchuangYu / bookmarks

Related projects: ⓘ

• JhuangLab / ngstk
  A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
  ☆19Updated 5 years ago
• GuangchuangYu / rvcheck
  R/Package Version Check
  ☆22Updated 2 years ago
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆17Updated 5 years ago
• alosdiallo / DNA_Rchitect
  A Shiny App for visualizing genomic data
  ☆18Updated 2 years ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆43Updated 3 months ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated 6 months ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆41Updated 8 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆35Updated 2 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆37Updated 3 weeks ago
• wencke / wencke.github.io
  GOplot
  ☆18Updated 7 years ago
• davidrequena / DESeq2
  Guide for the Differential Expression Analysis of RNAseq data using DESeq2
  ☆21Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆22Updated 5 years ago
• biodatalab / escape_excel
  Escape Excel: a tool for preventing gene symbol and accession conversion errors
  ☆27Updated 5 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆15Updated 5 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 10 months ago
• G3viz / g3viz
  Lollipop-diagram to interactively visualize genetic mutations
  ☆30Updated last week
• mikelove / deseq2_or_edger
  DESeq2 or edgeR
  ☆22Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆23Updated 6 months ago
• openbiox / Awesome-Bioinformatics-Workflow-Chinese
  Openbiox 翻译小组发起并维护的优秀 Workflow 翻译项目
  ☆27Updated 4 years ago
• kevinblighe / CorLevelPlot
  Visualise correlation results and test significancies of these
  ☆21Updated 4 years ago
• slowkow / homerkit
  Read HOMER motif analysis output in R.
  ☆15Updated 6 years ago
• GuangchuangYu / ggplot2-ninja
  ☆11Updated this week
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆30Updated 3 weeks ago
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆24Updated 2 years ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆21Updated last week
• egaffo / CirComPara
  A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  ☆14Updated 4 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆32Updated 6 years ago
• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆25Updated 6 years ago
• YuLab-SMU / ReactomePA
  Reactome Pathway Analysis
  ☆37Updated 3 weeks ago