Alternatives and similar repositories for PESTO:

Users that are interested in PESTO are comparing it to the libraries listed below

• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆21Updated last month
• aki-nishimura / NUTS-matlab
  ☆15Updated 8 years ago
• AMICI-dev / AMICI
  Advanced Multilanguage Interface to CVODES and IDAS
  ☆114Updated this week
• fides-dev / fides
  Trust Region Optimization in Python
  ☆27Updated last year
• afvillaverde / strike-goldd
  A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)
  ☆25Updated 5 months ago
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆59Updated this week
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆236Updated last week
• SciML / PolyChaos.jl
  A Julia package to construct orthogonal polynomials, their quadrature rules, and use it with polynomial chaos expansions.
  ☆119Updated 5 months ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆61Updated this week
• niallmm / iSINDy
  implicit-SINDy code example from paper "Inferring Biological Networks by Sparse Identification fo Nonlinear Dynamics" http://ieeexplore.i…
  ☆29Updated 7 years ago
• gaioguy / GAIO
  Matlab toolbox for set-oriented numerics in dynamical systems
  ☆18Updated 9 months ago
• cagatayyildiz / npode
  Learning unknown ODE models with Gaussian processes
  ☆26Updated 6 years ago
• JuliaFirstOrder / ProximalOperators.jl
  Proximal operators for nonsmooth optimization in Julia
  ☆134Updated last year
• SciML / DiffEqBayes.jl
  Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform…
  ☆121Updated this week
• RajDandekar / MSML21_BayesianNODE
  ☆36Updated 3 years ago
• luraess / parallel-gpu-workshop-JuliaCon21
  Solving differential equations in parallel on GPUs - JuliaCon 2021 workshop
  ☆94Updated last year
• numericalalgorithmsgroup / pybobyqa
  Python-based Derivative-Free Optimization with Bound Constraints
  ☆78Updated 6 months ago
• Ohjeah / sparsereg
  a collection of modern sparse (regularized) linear regression algorithms.
  ☆61Updated 4 years ago
• jsnowacki / xppy
  [UNMAINTAINED] XPPy is Python interface for Bard Ermentrout's XPP.
  ☆29Updated 2 years ago
• genssi-developer / GenSSI
  GenSSI 2.0 - Generating Series for testing Structural Identifiability
  ☆14Updated 11 months ago
• SciML / StructuralIdentifiability.jl
  Fast and automatic structural identifiability software for ODE systems
  ☆113Updated this week
• JuliaFirstOrder / StructuredOptimization.jl
  Structured optimization in Julia
  ☆72Updated last year
• niallmm / Hybrid-SINDy
  Sparse Identification of Nonlinear Dynamics for Hybrid Systems
  ☆23Updated 6 years ago
• chengl7 / LonGP
  Gaussian process regression + automatical model selection for logitudinal -omics data
  ☆21Updated 4 years ago
• JuliaFirstOrder / ProximalAlgorithms.jl
  Proximal algorithms for nonsmooth optimization in Julia
  ☆133Updated 2 months ago
• SciML / GlobalSensitivity.jl
  Robust, Fast, and Parallel Global Sensitivity Analysis (GSA) in Julia
  ☆53Updated this week
• mschauer / Bridge.jl
  A statistical toolbox for diffusion processes and stochastic differential equations. Named after the Brownian Bridge.
  ☆112Updated 3 years ago
• PieterjanRobbe / GaussianRandomFields.jl
  A package for Gaussian random field generation in Julia
  ☆73Updated 6 months ago
• n-takeishi / bayesiandmd
  Bayesian Dynamic Mode Decomposition (Bayesian DMD)
  ☆18Updated 3 years ago