python Parameter EStimation TOolbox
☆280Aug 13, 2026Updated 2 weeks ago
Alternatives and similar repositories for pyPESTO
Users that are interested in pyPESTO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Jun 22, 2026Updated 2 months ago
- High-performance sensitivity analysis for large ordinary differential equation models☆144Aug 18, 2026Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Jul 14, 2026Updated last month
- Python package for working with PEtab files☆17Aug 19, 2026Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Jul 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- distributed, likelihood-free inference☆221Jul 31, 2026Updated last month
- Tool to convert an ODE model specified in the YAML format to SBML.☆13Jun 13, 2023Updated 3 years ago
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 9 months ago
- Model selection for PEtab☆14Jul 21, 2026Updated last month
- Create and fit parameter-estimation problems for ODE and SciML models in Julia, leveraging the Julia SciML ecosystem.☆71Updated this week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Apr 6, 2024Updated 2 years ago
- Python framework for Systems Biology modeling☆199May 19, 2026Updated 3 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices☆26Updated this week
- tools to perform group contribution (GC) identification, given the SMILES of a compound☆23Updated this week
- Python utilities for SBML☆41Aug 6, 2026Updated 3 weeks ago
- Hybrid Modeling Framework☆29Jan 25, 2023Updated 3 years ago
- a modeling environment tailored to parameter estimation in dynamical systems☆65Feb 18, 2026Updated 6 months ago
- The Fresa Julia package for black-box optimization☆15Nov 20, 2025Updated 9 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- Non-Linear Least Squares Minimization, with flexible Parameter settings, based on scipy.optimize, and with many additional classes and me…☆1,232Aug 3, 2026Updated 3 weeks ago
- sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you nee…☆861Aug 20, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A numerical platform for the digital design of pharmaceutical processes☆36Aug 10, 2026Updated 3 weeks ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 8 months ago
- Benchmarking and metadata tracking. CLI and Python integration. Extensible, with distributed/cluster support.☆20Aug 13, 2026Updated 2 weeks ago
- A collection of tools (classes, functions, etc.) for developing MINLP algorithms☆39Oct 27, 2023Updated 2 years ago
- A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results☆44Updated this week
- pyMOR - Model Order Reduction with Python☆346Updated this week
- Docker images for Chaste☆13Jul 21, 2026Updated last month
- UQpy (Uncertainty Quantification with python) is a general purpose Python toolbox for modeling uncertainty in physical and mathematical s…☆362Updated this week
- Python binding for odeiv2 interface from GNU Scientific Library (GSL)☆14Aug 18, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Updated this week
- Probabilistic Numerics in Python.☆460Jul 3, 2025Updated last year
- INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and datab…☆222Jun 30, 2026Updated 2 months ago
- Solving differential equations in Python using DifferentialEquations.jl and the SciML Scientific Machine Learning organization