ICB-DCM / pyPESTO
python Parameter EStimation TOolbox
☆239Updated this week
Alternatives and similar repositories for pyPESTO:
Users that are interested in pyPESTO are comparing it to the libraries listed below
- distributed, likelihood-free inference☆211Updated 5 months ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- Advanced Multilanguage Interface to CVODES and IDAS☆116Updated this week
- Trust Region Optimization in Python☆27Updated last year
- Solve ODEs fast, with support for PyMC☆112Updated 10 months ago
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆96Updated 2 years ago
- Leveraging numba to speed up ODE integration☆71Updated 9 months ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Updated last month
- Model selection for PEtab☆12Updated last month
- Methods for numerical differentiation of noisy data in python☆116Updated 3 weeks ago
- Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.☆229Updated 2 years ago
- Just-in-Time Compilation for Ordinary Differential Equations☆63Updated last month
- Probabilistic Inference on Noisy Time Series☆234Updated last month
- Optimal numerical differentiation of noisy time series data in python.☆61Updated 7 months ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- a tutorial and 'cookiecutter' template for a scientific Python library☆118Updated last year
- UM-Bridge (the UQ and Model Bridge) provides a unified interface for numerical models that is accessible from virtually any programming l…☆38Updated 2 weeks ago
- ⚡️ zeus: Lightning Fast MCMC ⚡️☆233Updated last year
- Python version of Rick Chartrand's algorithm for numerical differentiation of noisy data☆70Updated 4 years ago
- ☆99Updated last year
- A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations.☆69Updated this week
- Python package for working with PEtab files☆14Updated this week
- Symbolic Fitting; fitting as it should be.☆241Updated last year
- Python wrapper of Minpack (root finding) which can be called from within numba functions.☆34Updated 3 years ago
- Chaospy - Toolbox for performing uncertainty quantification.☆455Updated 3 weeks ago
- A list of Python-based MCMC & ABC packages☆123Updated 9 months ago
- Python library for parallel multiobjective simulation optimization☆79Updated 7 months ago
- A Sensitivity and uncertainty analysis toolbox for Python based on the generalized polynomial chaos method☆80Updated last week
- Python package for solving partial differential equations using finite differences.☆433Updated last week
- Numerically solve the Fokker-Planck equation in N dimensions☆88Updated last year