ICB-DCM / pyPESTOLinks
python Parameter EStimation TOolbox
☆262Updated this week
Alternatives and similar repositories for pyPESTO
Users that are interested in pyPESTO are comparing it to the libraries listed below
Sorting:
- High-performance sensitivity analysis for large ordinary differential equation models☆127Updated this week
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆100Updated 2 years ago
- Trust Region Optimization in Python☆28Updated 2 years ago
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- distributed, likelihood-free inference☆217Updated 4 months ago
- ☆100Updated 2 weeks ago
- Methods for numerical differentiation of noisy data in python☆126Updated last week
- Solve ODEs fast, with support for PyMC☆117Updated last year
- Leveraging numba to speed up ODE integration☆73Updated last month
- Optimal numerical differentiation of noisy time series data in python.☆66Updated 3 months ago
- Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.☆229Updated 3 years ago
- Python version of Rick Chartrand's algorithm for numerical differentiation of noisy data☆73Updated 5 years ago
- Probabilistic Inference on Noisy Time Series☆239Updated last month
- Chaospy - Toolbox for performing uncertainty quantification.☆466Updated last month
- Just-in-Time Compilation for Ordinary Differential Equations☆68Updated 3 months ago
- Solving differential equations in Python using DifferentialEquations.jl and the SciML Scientific Machine Learning organization☆582Updated last week
- UM-Bridge (the UQ and Model Bridge) provides a unified interface for numerical models that is accessible from virtually any programming l…☆38Updated this week
- UQpy (Uncertainty Quantification with python) is a general purpose Python toolbox for modeling uncertainty in physical and mathematical s…☆329Updated 2 months ago
- A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations.☆71Updated last week
- Python package for solving partial differential equations using finite differences.☆446Updated this week
- The ODES scikit for ordinary differential and algebraic equations, an extension to scipy☆128Updated 9 months ago
- This is an implementation of Deutsch and Deutsch, "Latin hypercube sampling with multidimensional uniformity", Journal of Statistical Pla…☆81Updated 5 years ago
- Symbolic Fitting; fitting as it should be.☆244Updated last year
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 8 months ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- Numerically solve the Fokker-Planck equation in N dimensions☆94Updated 2 weeks ago
- Python 3 framework to facilitate verification, validation and uncertainty quantification (VVUQ) for a wide variety of simulations.☆97Updated 2 months ago
- pyMOR - Model Order Reduction with Python☆329Updated last week
- Design of experiments for Python☆46Updated this week
- PyDSTool main development repo☆176Updated 2 years ago