These are the famous Uppsala Software Factory programs, rescued into GitHub.
☆10Nov 3, 2022Updated 3 years ago
Alternatives and similar repositories for Uppsala-Software-Factory
Users that are interested in Uppsala-Software-Factory are comparing it to the libraries listed below
Sorting:
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- Scripts and Tools for Electron Microscopy Image Analysis.☆11Nov 25, 2025Updated 3 months ago
- scripts to monitor cryo-em jobs☆10Sep 29, 2021Updated 4 years ago
- A possible schema for cryoET geometry metadata☆11Aug 11, 2025Updated 6 months ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆14Oct 21, 2025Updated 4 months ago
- ☆13Feb 23, 2024Updated 2 years ago
- ☆19Dec 22, 2025Updated 2 months ago
- 3D printing data in "Tidy up cryo-EM sample grids with 3D printed tools"☆14Apr 20, 2022Updated 3 years ago
- DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps☆17Jan 30, 2026Updated last month
- Javascript package for embedding sequence logos☆17Jun 16, 2025Updated 8 months ago
- BlasterJS - an open source JS library to display Blast results☆20Oct 18, 2019Updated 6 years ago
- A scoring function model based on 3D convolutional neural network for protein-ligand binding affinity prediction.☆17Oct 8, 2021Updated 4 years ago
- qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.☆47Feb 16, 2026Updated 2 weeks ago
- Python customizations for the macromolecular model building software Coot.☆22Oct 26, 2023Updated 2 years ago
- Library to visualize protein sequence features in Typescript using D3. This repository is based on calipho-sib/feature-viewer.☆24Feb 4, 2023Updated 3 years ago
- A JavaScript molecular graphics program☆22Feb 25, 2026Updated last week
- Generated color schemes for sequence alignment visualizations☆18Jul 20, 2022Updated 3 years ago
- Visualize sequence and multiple sequence alignment (MSA)☆15May 30, 2022Updated 3 years ago
- A laboratory information management system (LIMS) for cryoEM☆26Jan 12, 2023Updated 3 years ago
- Conventions for 3DEM software packages☆19Feb 22, 2022Updated 4 years ago
- Foldy: a web-based platform for interactive protein structure analysis☆29Oct 28, 2025Updated 4 months ago
- AlphaFind: Discover structure similarity across the entire known proteome☆24Nov 5, 2025Updated 3 months ago
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 3 years ago
- cryo-EM tomogram simulator☆30Feb 18, 2026Updated 2 weeks ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- Calculate electron density from a solution scattering profile☆39Jan 28, 2026Updated last month
- ☆31Aug 16, 2021Updated 4 years ago
- pyKVFinder: Python-C parallel KVFinder☆35Updated this week
- ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.☆41Mar 11, 2025Updated 11 months ago
- MOLeculAR structure annoTator☆33Oct 2, 2024Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Jul 28, 2022Updated 3 years ago
- Software for macromolecular model-building☆155Updated this week
- Macromolecular viewer for crystallographers (WebGL)☆40Aug 8, 2025Updated 6 months ago
- cryo-ET particle picking by representation and metric learning☆42Nov 24, 2025Updated 3 months ago
- Free collection of Bio datasets and embeddings☆35Oct 10, 2022Updated 3 years ago
- Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps☆41Feb 19, 2026Updated last week
- Create a citation graph from pubmed data using R☆10Nov 4, 2016Updated 9 years ago
- ☆12Aug 3, 2023Updated 2 years ago
- ☆10Dec 4, 2021Updated 4 years ago