CMU-SAFARI / COVIDHunterLinks
COVIDHunter 🦠: An accurate and flexible COVID-19 outbreak simulation model that forecasts the strength of future mitigation measures and the numbers of cases, hospitalizations, and deaths for a given day, while considering the potential effect of environmental conditions. Described by Alser et al. (preliminary version at https://arxiv.org/abs/2…
☆9Updated 3 years ago
Alternatives and similar repositories for COVIDHunter
Users that are interested in COVIDHunter are comparing it to the libraries listed below
Sorting:
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆52Updated 2 years ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆19Updated 6 years ago
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆22Updated 2 years ago
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Updated 7 years ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Updated 2 years ago
- A benchmark suite to study the performance characteristics of genomics applications☆32Updated 7 months ago
- ☆14Updated 6 months ago
- generating hardware accelerators for pangenomic graph queries☆38Updated 3 weeks ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated 6 months ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆17Updated 6 years ago
- Falcon Accelerated Genomics Pipelines☆15Updated 5 years ago
- Co-processor for whole genome alignment☆13Updated 5 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆29Updated 2 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated last year
- micro-read Fast Alignment Search Tool☆19Updated 5 years ago
- A new DRAM substrate that mitigates the excessive energy consumption from both (i) transmitting unused data on the memory channel and (i…☆12Updated 9 months ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆13Updated 3 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Updated 2 years ago
- DRAM error-correction code (ECC) simulator incorporating statistical error properties and DRAM design characteristics for inferring pre-c…☆10Updated last year
- Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly☆16Updated 11 months ago
- ☆23Updated 3 years ago
- The purpose of the repo is to support CORE-V Wally architectural verification☆12Updated this week
- Virtualized Accelerator Orchestration for Multi-Tenant Workloads☆15Updated 6 months ago
- pLUTo is a DRAM-based Processing-using-Memory architecture that leverages the high density of DRAM to enable the massively parallel stori…☆17Updated 2 years ago
- A binary instrumentation tool to analyze load instructions in any off-the-shelf x86(-64) program. Described by Bera et al. in https://arx…☆21Updated 11 months ago
- cycle accurate Network-on-Chip Simulator☆27Updated 2 years ago
- ☆18Updated last week
- NeuroSpector: Dataflow and Mapping Optimizer for Deep Neural Network Accelerators☆21Updated 2 months ago
- TransPimLib is a library for transcendental (and other hard-to-calculate) functions in general-purpose PIM systems, TransPimLib provides …☆14Updated 2 years ago
- Processing-in Memory Architecture for Multiply-Accumulate Operations with Hybrid Memory Cube☆12Updated 8 years ago