SilasK / ipath3
Python wrapper for ipath3
☆10Updated 11 months ago
Related projects: ⓘ
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆20Updated 7 months ago
- Microbiome research☆20Updated 2 years ago
- Talk to the NCBI EUtils☆20Updated 3 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- tidyMicro GitHup Repository☆18Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 3 months ago
- The Mouse Gastrointestinal Bacteria Catalogue☆14Updated 2 years ago
- ☆13Updated last year
- Microbiome profiling☆16Updated 2 months ago
- A comprehensive and customizable R package for microbiome analysis.☆20Updated last year
- Drawing 'dendrogram' using 'ggtree'☆12Updated this week
- ☆12Updated 6 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆23Updated 6 months ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- ☆25Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated last month
- Nanopore Real-Time Analysis Tool☆13Updated 2 weeks ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 2 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆19Updated 2 weeks ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆12Updated 3 years ago
- PanGenomePipeline☆15Updated 5 months ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆33Updated 5 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆15Updated 4 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆28Updated last year
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 2 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 11 months ago